Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0055 ATGAAGCTCACAGTGAAGACTCTGAAAGGAAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCTATAATGGCTGTAAAAATGAATATTGAAGACATTCAAGGAAAAGATAATTACCCATGCAGACAACAATTGCTAATTCACAATGGAAAAGTTTTGAAAGATGAAACTACTTTAGCTGATAATGAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTCAGTAAGGTAAATAATAGATCTATGAGTGGTGAGTGTTTCGTTGATAACTCTGAAGAAGAGGATGAAGAACACTTATTTGATGAATCAGACGAAGAGGATGAAGAACAATTCTTTGATGACTTGGACGGAGATGAGGATAAAGAATAA 369 0.3523 MKLTVKTLKGSHFEIRVHPSDSIMAVKMNIEDIQGKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRSMSGECFVDNSEEEDEEHLFDESDEEDEEQFFDDLDGDEDKE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0055 122 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 87 - -
Mtr1g0055 122 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Mtr1g0055 122 Gene3D - 1 77 - -
Mtr1g0055 122 SMART ubq_7 1 75 IPR000626 GO:0005515
Mtr1g0055 122 MobiDBLite consensus disorder prediction 90 122 - -
Mtr1g0055 122 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 87 - -
Mtr1g0055 122 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mtr1g0055 122 CDD Ubl_Rad23 1 74 - -
Mtr1g0055 122 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0055 Mtr-Chr1 577407 581648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0055 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 2.62e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0055 K10839 - qsu:111983334 145.591