Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0054 ATGGCTAGGTTCAGCGAAGAAGAATTTCAATTTTTTGATGCTCAAGATGATATTGTGTCAATCTCAGATGCAAATGGTGTTGCTGACAACCATGAAGTTGATTCTGGTCCTCCTTTGGGGGACGGTTTGCTGAGAGATTTTGGATATGAATGGTGGACCAGGAGTCCGGGTAGTGTTAGAGAGCGTAGGAGTAAGTTTATAAAGTGGATGGAATTGAGTTTGGATCAGAAAAACCTTGAGAATTCGGTAGATGGAAGTAGTTATGAAAGAGAAGATGAGATAAATAGAATGAAAGATGGTGGCAGTAGTGTGACCAAAAGTAATGGTTTTATGGAGGATTTCTTTTCAAGTCGGTTATCGATGTCTTGTTTGTCTTCCATGAATTCTTCAGAATTTGGTGCTTTGGTGGAGAATTCGGCATGCCAAGATAGGAATGATGGAGGGGAAGTAGGTTTGGATCAGTTAGTGGTTTCGGATGAATCTGTGAACGCCGCTGAGGTATCTTCTACCAGTTACCAACATGAGTTTGGTGAGGAGTTTGAGGAGACCGGTGTGTTTGAGCCGTGGACAAAGAGGGTTAAAAAGAGTTGGTTAAGAAAATTGCGTTCAATGACATGCATGATGGATGTACAACAAGGAGAATCTGATAACAGGAAACACGAAGACGGTGTTTCATTTTCGGATTGTAGGATTCAGCGAGTTAAGGTTCGTCAATGCAAGAAACAAAGGAAGGAACTTTCAGCTCTTTATATGGGACAAGATATTCAAGCACACGAAGGTCCAATTTTTACCATGAAATTTAGTCCTGACGGCCAGTATCTTGCTAGTGCCGGCGAAGATGGAATTGTGCGATTGTGGCAAGTTGTTGAGGATGAGAGGCATAATGAAATTGACATTCCAGAAGTTGATACATCCTGTATTTACTTTACAGTGAATGATCTCTCGGAATTGACACCCTTGTTTATGGATAAGGATAAAATTACAAATGTGAAGACCCTGAAAAAGACATCAGATTCAGCTTGCATCATTTTTCCTCCTAAGGTCTTCCGGTTGATGGAGAAACCACTTCATGAGTTTCATGGTCATGGAGGTGAAATTTTGGATCTCTCTTGGTCAAAGAATAATTATTTGCTGTCTTCGTCGGTTGATAAAACTGTTCGTCTATGGCAAGTGGGACATGACTGCTGCTTGAAAGTTTTCTCGCACAGTAACTATGTGACATGCATACAATTCAATCCTGTGGATGATGATTATTTCATTAGCGGATCAATAGATGGAAAAGTGCGCATATGGGGAATTCCTGATTGTCATGTTGTTGATTGGACTGATGTCAAGGAAATTGTCACCGCAGTGTGCTATCGGCCTGATGGACAGGTAGGGATTATTGGCTCCATGACAGGCAATTGTCGGTTTTACAATGTATCAGATAATCAATTACGGATGCAATCACAACTATGCTTACTTGGTAAAAAGAAATCTTCTGGAAGAGGAATAACCGGCTTTCAGTTTCTTCCACAAGATTTTAACAAAGTTATGGTTACCTGTGATGATTCACAAGTCAGAATCATTGAAGGTCTTAATGTCGTTGAAAAATTTAAAGGCCTTAATGCTGGGAGCTTAATGTCCGCATCTTTTACTTCAGATGGAAAACACATTTTATCAGCCTGTGAAGATTCAAATGTATATCTGTGGAATGTTAGTGACAACGAGTCTCGCTCCACAAAAGCTAAGAAGATTAAGTCCTGCGAGCGGTTTTTTTCAAATGCATCTGTTGCAGTACCTTGGGGTGGTTTGAAATCTGATAACATTGAAAATTCTAAAAAATTGGATGTACTAAATAAGAGGCCACCTCAAGCTGTATGCCTCGATCCACCGTCTTCTTTTTCTCTAAGCCAAGATTTTTATTTGAATTCTATTCCGAAAGGTTCCGCAACTTATCCTGAGGAGAAACTTCCTACTTCAAGCCCTAAGAGTAAAAAATCTTCACTGCACAAATCTGCATACAAGTTCTTGAAATCTTCATGCAAGAGTACTTCCAATTGTCATGCATGGGGTCTAGTAATTGTGACTGCCGGTTGGGATGGGCGAATAAAATCATTCCACAATTACGGATTACCTGTACTCCTTTGA 2130 0.4014 MARFSEEEFQFFDAQDDIVSISDANGVADNHEVDSGPPLGDGLLRDFGYEWWTRSPGSVRERRSKFIKWMELSLDQKNLENSVDGSSYEREDEINRMKDGGSSVTKSNGFMEDFFSSRLSMSCLSSMNSSEFGALVENSACQDRNDGGEVGLDQLVVSDESVNAAEVSSTSYQHEFGEEFEETGVFEPWTKRVKKSWLRKLRSMTCMMDVQQGESDNRKHEDGVSFSDCRIQRVKVRQCKKQRKELSALYMGQDIQAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVVEDERHNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKITNVKTLKKTSDSACIIFPPKVFRLMEKPLHEFHGHGGEILDLSWSKNNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCIQFNPVDDDYFISGSIDGKVRIWGIPDCHVVDWTDVKEIVTAVCYRPDGQVGIIGSMTGNCRFYNVSDNQLRMQSQLCLLGKKKSSGRGITGFQFLPQDFNKVMVTCDDSQVRIIEGLNVVEKFKGLNAGSLMSASFTSDGKHILSACEDSNVYLWNVSDNESRSTKAKKIKSCERFFSNASVAVPWGGLKSDNIENSKKLDVLNKRPPQAVCLDPPSSFSLSQDFYLNSIPKGSATYPEEKLPTSSPKSKKSSLHKSAYKFLKSSCKSTSNCHAWGLVIVTAGWDGRIKSFHNYGLPVLL* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515
Mtr1g0054 709 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Mtr1g0054 709 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Mtr1g0054 709 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 431 IPR001680 GO:0005515
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 288 - -
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 431 - -
Mtr1g0054 709 Pfam WD domain, G-beta repeat 354 389 IPR001680 GO:0005515
Mtr1g0054 709 Pfam WD domain, G-beta repeat 256 286 IPR001680 GO:0005515
Mtr1g0054 709 Pfam WD domain, G-beta repeat 396 431 IPR001680 GO:0005515
Mtr1g0054 709 PANTHER WD REPEAT DOMAIN 44 6 708 IPR040324 -
Mtr1g0054 709 ProSitePatterns Trp-Asp (WD) repeats signature. 552 566 IPR019775 -
Mtr1g0054 709 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 708 - -
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515
Mtr1g0054 709 SUPERFAMILY WD40 repeat-like 254 699 IPR036322 GO:0005515
Mtr1g0054 709 SMART WD40_4 393 432 IPR001680 GO:0005515
Mtr1g0054 709 SMART WD40_4 434 473 IPR001680 GO:0005515
Mtr1g0054 709 SMART WD40_4 352 390 IPR001680 GO:0005515
Mtr1g0054 709 SMART WD40_4 484 524 IPR001680 GO:0005515
Mtr1g0054 709 SMART WD40_4 525 565 IPR001680 GO:0005515
Mtr1g0054 709 SMART WD40_4 248 287 IPR001680 GO:0005515
Mtr1g0054 709 Gene3D - 235 490 IPR015943 GO:0005515
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 391 - -
Mtr1g0054 709 Gene3D - 491 701 IPR015943 GO:0005515
Mtr1g0054 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 574 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0054 Mtr-Chr1 565088 569632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0054 351 562 U-box Gene Family AT2G33340 24.229 6.45e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0054 - - mtr:MTR_1g007740 1385.16