Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0053 ATGATGGATATGAACATGAATATCCAGCTGAATATTTTGTCTAATTGTGTAGCATCTGTCAACGATCCGGAGCTTATTGTCACTTTGTGCTCGATTTCTCATTTCTCACTTACTCACACAAGCAAACCCTCGTCTCACATCCCAAATCTCATGGCTTCATTGTGTCGAAGAAGAACACGAGCTCCCCAAAAAAAAACCTCCATCTTCAACAATGACGACATTGTTTGCCAGAAATGCAACTCCGGCAAATCCCCAACCAAGTTGCTTCTTTGCGACAATTGCAACAAAGGCTACCATCTCTTCTGCCTGACTTCCGTCCCGAAATCCTCGTGGTTTTGCCCCTCTTGCTCCCACAACACCAACACTAAATATGTAAGGAAGAAGAGAAAGCGGGGTAGTCGTTGGGTGAGTTCGAAAAAGAAATGGAATCTATTGCCATTTGTGCCGAGTGCTGATTCTATGAGGAGATTAGAACAGATGGCTTCGTTGGTGAATGCGTTGGCTGCAACCAAAGCGGAGTTCAGTAACGCACTTACATATATGCCTGGAATGGCACCAAGGAATGCAAATTCTACTGCTCTTGAAGATGGGGGTGGGGGAATTCAGGTATTATCAAAAGAAGGCACCAAGGCTCTAAACTTGTGCACAGATATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTATGATCCGCTGGAAGGGTATACTGTAGAAGCTGATAAACCCATAGAAGCTTTGACAATAATAGCAGAATATGTGGGAGATGTGGACTACCTAAAGAATCGGGAAGATGATGAGGTGAATAATAGCATGATGACACTTCTTTATGCTTCTGATCCTTCACAATCGCTGATCATCTGCCCAGATAAACGTAGCAACATAGCACGTTTCATTAGTGGAATCAACAATCACACTCGTGAAGGAAAAAAGAAGCAGAACGTGAAATCTGCGAGATTTAATGTTAATGGTGAATTTCGGGTTCTTTTAATTGCTAAAAGATATATACCGAAGGGAGAAAGATTGTATTATGACTACAATGGATCCGAAAATGCATATCCAACTAAACATTTTGTTTAA 1083 0.4192 MMDMNMNIQLNILSNCVASVNDPELIVTLCSISHFSLTHTSKPSSHIPNLMASLCRRRTRAPQKKTSIFNNDDIVCQKCNSGKSPTKLLLCDNCNKGYHLFCLTSVPKSSWFCPSCSHNTNTKYVRKKRKRGSRWVSSKKKWNLLPFVPSADSMRRLEQMASLVNALAATKAEFSNALTYMPGMAPRNANSTALEDGGGGIQVLSKEGTKALNLCTDMMERGECPPLMVVYDPLEGYTVEADKPIEALTIIAEYVGDVDYLKNREDDEVNNSMMTLLYASDPSQSLIICPDKRSNIARFISGINNHTREGKKKQNVKSARFNVNGEFRVLLIAKRYIPKGERLYYDYNGSENAYPTKHFV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0053 360 ProSiteProfiles SET domain profile. 225 348 IPR001214 GO:0005515
Mtr1g0053 360 Gene3D SET domain 131 360 IPR046341 -
Mtr1g0053 360 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 55 357 - -
Mtr1g0053 360 PANTHER HISTONE ACETYLTRANSFERASE 55 357 - -
Mtr1g0053 360 SUPERFAMILY FYVE/PHD zinc finger 67 127 IPR011011 -
Mtr1g0053 360 CDD SET_ATXR5_6-like 222 360 - -
Mtr1g0053 360 ProSitePatterns Zinc finger PHD-type signature. 76 116 IPR019786 -
Mtr1g0053 360 ProSiteProfiles Zinc finger PHD-type profile. 73 119 IPR019787 -
Mtr1g0053 360 SUPERFAMILY SET domain 219 350 IPR046341 -
Mtr1g0053 360 Pfam PHD-finger 75 118 IPR019787 -
Mtr1g0053 360 SMART PHD_3 75 117 IPR001965 -
Mtr1g0053 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 130 IPR013083 -
Mtr1g0053 360 CDD PHD_RSF1 76 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0053 Mtr-Chr1 535247 539510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0053 72 135 C2H2 Transcription Factor Family AT3G01460 31.081 1.19e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g0053 PHD 9.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0053 K24406 - mtr:MTR_1g007700 719.924