Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0051 ATGGTTTCACCACTTCGCCGAAGAAGAATTCCAGCTCCCAAAAAACAATCCACGACCTTCAACAACAACGACGACGACGTAGTTTGCCAGAAATGCAACTCCGGCAAATCCCCAACTAAGTTGCTTCTCTGCGACAATTGCGACAACGGCTATCATCTCTTCTGCCTCACTCCTATCCTCCCTTCCGTCCCTAAATCCTCTTGGTTTTGCCCCTCCTGCTCTCACAATCCCAAAATCCCCAAATCTTTTCCTCTTGTACAAACCAAAATTATTGATTTCTTCAAAATCCAACGAACTTCGGATGCATCTCAGATTCTGAATCATGATTCAAAGAAGAAGAGAAAGCGGAGTAGTAGCTTGGTTGTTTCAAAAAAGAAAAGAAAGTTGTTGGCATTTGTGCCAAATGATGATTTGAAGAGGAGATTAGAACAGATGGCGTCGTTGGCGACCGCGTTGACAGCTACTAAAACAGAGTTCAGTAATGAGCTTACGTATATGCCTGGAATGGCGCCAAGGGATGCTAATTCTCCTGTTCTTGAACGTGGGGGAATGCAGGTCTTATCAAAAGAAGACACCGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTATGATCCTGTAGAAGGGTTCACTATAGAAGCAGATAAGTCCATCAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGACTTTTTGAAGAATAGGGAACATGATGATGGAGATAGCATTATGACACTTCTTTCTGCTTCTAATCCTTCACAGTCACTGGTCATCTGCCCAGATAAACGTAGCAATATAGCACGTTTCATTAACGGCATCAACAATCACACTCCTGAAGGAAAAAAGAAGCAGAACTTGAAATGCGTGAGATATAACGTCGATGGTGAATGTCGGGTTCTTTTAATTGCAAATAGAGATATAGCAAAGGGGGAAAGGTTGTATTATGACTACAATGGATTAGAACATGAATATCCAACTGAACATTTTGTCTAA 1029 0.415 MVSPLRRRRIPAPKKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKSFPLVQTKIIDFFKIQRTSDASQILNHDSKKKRKRSSSLVVSKKKRKLLAFVPNDDLKRRLEQMASLATALTATKTEFSNELTYMPGMAPRDANSPVLERGGMQVLSKEDTETLNLCRSMMERGECPPLMVVYDPVEGFTIEADKSIKDLTIITEYVGDVDFLKNREHDDGDSIMTLLSASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDYNGLEHEYPTEHFV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0051 342 CDD SET_ATXR5_6-like 205 342 - -
Mtr1g0051 342 Pfam PHD-finger 28 75 IPR019787 -
Mtr1g0051 342 CDD PHD_RSF1 29 73 - -
Mtr1g0051 342 Gene3D SET domain 114 342 IPR046341 -
Mtr1g0051 342 Gene3D - 1 76 - -
Mtr1g0051 342 SUPERFAMILY SET domain 200 330 IPR046341 -
Mtr1g0051 342 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Mtr1g0051 342 SUPERFAMILY FYVE/PHD zinc finger 23 84 IPR011011 -
Mtr1g0051 342 SMART PHD_3 28 74 IPR001965 -
Mtr1g0051 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 339 - -
Mtr1g0051 342 PANTHER HISTONE ACETYLTRANSFERASE 7 339 - -
Mtr1g0051 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Mtr1g0051 342 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0051 Mtr-Chr1 524164 527564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0051 25 73 C2H2 Transcription Factor Family AT3G01460 46.939 1.88e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g0051 PHD 5.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0051 K24406 - gmx:100775247 528.094