Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0027 ATGGCTATGCAATCACCTTCCTCTTCCTCTTCAATCTCATATGGATTTGCCTACCAGGTCTTCCTCAACTTCAGAGGCGGTGACACTCGTGAGGGTTTTATTGGCCATCTCTACAAGGCTCTTACTGACAAGGGAATCCACACCTTCATTGATGATCGTGAACTTCAAAGAGGGGATGAAATCAAACCATCACTCGACAATGCCATTGAAGAGTCTAGGATTTTTATTCCTGTGTTTTCTATCAACTATGCCTCTTCTTCATTTTGTTTGGACGAACTTGTCCACATCATTCACTGCTACAAGAAAAAGGGTCGTCTCATTTTGCCCGTCTTCTATGGCGTGGATCCTACTCACATACGACATCAAAGTGGGAGTTATGGTGAACATCTCACTAAGCACGAAGAGAGTTTCCAAAATAGCAAGAAAAACATGGAGCGGTTGCATCAATGGAAGTTGGCTCTGACCCAAGCTTCTAACTTGTCTGGCTACCATTCTAGTCGTGGATATGAATACAAGTTTATTGGAGAGATAGTCAAATACATCTCCAACAAGATCAGTCGTGAGCCCTTACATGTTGCCAATTACCCTGTTGGATTATGGTCTCAAGTACAACAAGTGAAATTGCTTCTTGATAATGGATCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTGGAGGCTTGGGTAAATCAACCCTTGCAAGAGCAATCTATAATTTTATTGCTGATCAATTTGAAGGATTATGTTTTCTTCATGATGTGAGAGAAAATTCAGCTATAAGTAACTTGAAACATCTCCAAGAGAAGCTCCTTTTAAAAACAACTGGATTGGAAATTAAGTTAGACCATGTTAGTGAGGGCATTCCAATCATTAAGGAAAGGCTATGTAGAAAGAAGATTCTTTTGATTCTCGATGATGTTAACGATATAAAACAATTGCATGCTTTGGCTGGAGGACTTGATTGGTTCGGCTATGGAAGCAGAGTCGTCGTTACCACTCGAGACAAGCAATTACTAACCTGTCATGGGATAGAAAGTACGCATGAAGTAGAAGGGTTGTATGGGACCGAAGCTCTTGAATTGTTGAGTTGGATGGCTTTTAAAAATGATCCAGTTCCATCAATTTACAATGAGATTTTAATTCGTGCAGTTGCTTATGCTTCTGGCCTTCCGTTAGTTTTAGAAATTGTGGGTTCTAACTTGTTTGGAAAGAGCATAGAAGAATGGAAGGGTACATTAGATGGGTATGATAAGATTCCCAATAAAGAGATCCAAAAGATACTTAAAGTGAGCTATGATGGTTTGGAAGAAGAGGAGCAGAGTGTCTTTTTAGACATTGCTTGTTGCTTCAAAGGATATGAATGGGAAGATGCCAAACATATACTTCATTCTCATTATGGCCACTGCATAACACATCATCTAGGAGTGTTGGCTGAAAAATCTCTCATAGACCAATATTATAGTCATGTGACATTACATGACATGATAGAGGACATGGGTAAAGAAGTGGTCCGCCAAGAATCACCTAAAGAGCCTGGAGAACGAAGTAGGTTATGGTGTCAAGATGATATAGTTCATGTTTTAAATAAAAACACTGGAACTAGTAAAGTTGAAATGATATATATGAATTTCCACTCGATGGAACCTGTAATAGACCAGAAAGGAAAGGCCTTCAAGAAGATGACAAATCTCAAAACACTTGTCATTGAAAATGGGCATTTTTCTAAAGGTCTGAAGTACCTTCGAAGCAGTTTGAAAGTATTGAAATGGAAAGGATTTACTTCGGAGTCATTATCATCTTGTTTTTCGAACAAGGCAAGTGAAATGATTTCATTTTCTATTTGTATATATTTAGAAACTCACAATGATTTTGTTTACGTCAACAAAAAAAATCACTATGAGAGTATAGTCTTTGATTTTTAG 1926 0.3832 MAMQSPSSSSSISYGFAYQVFLNFRGGDTREGFIGHLYKALTDKGIHTFIDDRELQRGDEIKPSLDNAIEESRIFIPVFSINYASSSFCLDELVHIIHCYKKKGRLILPVFYGVDPTHIRHQSGSYGEHLTKHEESFQNSKKNMERLHQWKLALTQASNLSGYHSSRGYEYKFIGEIVKYISNKISREPLHVANYPVGLWSQVQQVKLLLDNGSDDGVHMVGIYGIGGLGKSTLARAIYNFIADQFEGLCFLHDVRENSAISNLKHLQEKLLLKTTGLEIKLDHVSEGIPIIKERLCRKKILLILDDVNDIKQLHALAGGLDWFGYGSRVVVTTRDKQLLTCHGIESTHEVEGLYGTEALELLSWMAFKNDPVPSIYNEILIRAVAYASGLPLVLEIVGSNLFGKSIEEWKGTLDGYDKIPNKEIQKILKVSYDGLEEEEQSVFLDIACCFKGYEWEDAKHILHSHYGHCITHHLGVLAEKSLIDQYYSHVTLHDMIEDMGKEVVRQESPKEPGERSRLWCQDDIVHVLNKNTGTSKVEMIYMNFHSMEPVIDQKGKAFKKMTNLKTLVIENGHFSKGLKYLRSSLKVLKWKGFTSESLSSCFSNKASEMISFSICIYLETHNDFVYVNKKNHYESIVFDF* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0027 641 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 163 IPR035897 -
Mtr1g0027 641 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Mtr1g0027 641 CDD AAA 202 356 - -
Mtr1g0027 641 SMART till_3 17 160 IPR000157 GO:0007165
Mtr1g0027 641 Gene3D - 12 184 IPR035897 -
Mtr1g0027 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 619 IPR044974 GO:0006952
Mtr1g0027 641 Pfam NB-ARC domain 202 434 IPR002182 GO:0043531
Mtr1g0027 641 Gene3D - 354 437 IPR042197 -
Mtr1g0027 641 Gene3D - 185 346 IPR027417 -
Mtr1g0027 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 447 IPR027417 -
Mtr1g0027 641 PRINTS Disease resistance protein signature 220 235 - -
Mtr1g0027 641 PRINTS Disease resistance protein signature 295 309 - -
Mtr1g0027 641 PRINTS Disease resistance protein signature 388 402 - -
Mtr1g0027 641 PRINTS Disease resistance protein signature 560 576 - -
Mtr1g0027 641 Pfam TIR domain 17 186 IPR000157 GO:0007165
Mtr1g0027 641 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Mtr1g0027 641 PANTHER ARCHAEAL ATPASE 27 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0027 Mtr-Chr1 299637 304677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0027 18 604 WRKY Transcription Factor Family AT4G12020 29.022 1.47e-62 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0027 - - mtr:MTR_6g071935 967.607