Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0011 ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAAGACAAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACATCGACGACGACACTACCATCATTTCCGACACCAACCTTGACTCGGCCACGGGCAACTCAACTGCCTCCTCCTCCACCCTTACCGTCGTCAATAGCGTTAGCCCGTCGTCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTATTCCGGAGGATGATTTAGCGGGCGACCTGGAATGGCTTTCCAATATTGTTGAGGAATCGTTTTCAAGTGAGGATCTTCAAAAGATGCAACTGATATCGGGCATGAAGGTAAGAAACCAGGACGAAGAACCCCGCGAGCTTTCCCAACCCAACCGAAACAATCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAATTCCTTATTCCCACCCCCACCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAATGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACGCCACAGTGGCGAACCGGGCCTAATGGCCCAAAAACATTATGCAATGCTTGTGGTGTAAGATATAAGTCGGGTCGATTGGTGCCCGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTCACTAAACACTCCAACTCGCATCGTAAAGTATTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAATAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG 1035 0.4821 MEGTTNNIFQTTFSSDNKTNNTTDNFIVEDLLNLNNDIDDDTTIISDTNLDSATGNSTASSSTLTVVNSVSPSSLSGCDPNVVPDIGCQNFSDSHFSGDLCIPEDDLAGDLEWLSNIVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNNPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESEFLIPTPTLPTVTVPRKQAKTAPRRKDNDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0011 344 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Mtr1g0011 344 PIRSF Txn_fac_GATA_plant 7 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mtr1g0011 344 Gene3D - 229 313 IPR013088 GO:0006355|GO:0008270
Mtr1g0011 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 294 - -
Mtr1g0011 344 MobiDBLite consensus disorder prediction 217 235 - -
Mtr1g0011 344 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Mtr1g0011 344 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Mtr1g0011 344 PANTHER GATA TRANSCRIPTION FACTOR 6 344 - -
Mtr1g0011 344 MobiDBLite consensus disorder prediction 193 235 - -
Mtr1g0011 344 MobiDBLite consensus disorder prediction 138 159 - -
Mtr1g0011 344 PANTHER GATA TRANSCRIPTION FACTOR 6 344 - -
Mtr1g0011 344 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Mtr1g0011 344 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Mtr1g0011 344 MobiDBLite consensus disorder prediction 193 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0011 Mtr-Chr1 156319 157836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0011 96 344 C2C2-Gata Transcription Factor Family AT5G25830 57.358 4.42e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr1g0011 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0011 - - cam:101502134 445.277