Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0008 ATGAGAGTTTCACCACAAAATTCAGAAACCGAGAGCACCTCAAATTCATCACCATACACAACAAACTCAATTCAAGAAGACCAAGAATCCAACAACAAGAAGTTGAAACGCAACCGTGATTCCAACAAACACCCCGTCTACCGAGGTGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCCGAAATCCGCGAGCCACGTAAGAAATCGCGGATTTGGCTAGGCACTTTCCCCACTGCTGAAATGGCTGCTAGAGCGCATGACGCTGCTGCGCTCTGCGTTAAAGGAAAATCCGCCATTCTAAATTTCCCTCACTTAAGAGATTCTCTTCCAAAACCTGTTTCTTTAGCCCCTCGCGACGTTCAGGCCGCGGCGGCTAAAGCAGCTCAAATGGACATTGGCAAATTTGAGCTATCATCATCTTCTTCTTCATTGTCATCGTTGTCAACATCTTCGTTGACAACGATGTCAACATCAACAAGTCTGTTAATGAAGACAACAAAAACTCTGTCTTCATCAGCAGACTTGTCAGCTACTTCTGAAGAACTTAGTGAGATTATTGAGCTACCAACTTTGGAAAACGGTTATGATGATGTTGGGAAAGAGGAATTTGTCTATGTTGACTCACAAGCACAAGACTATGCTTGGATGATGTATCAGCAACCAATGACATGGCTACAAACAACACAAGAAGAAGATGGTTGTTGTGTTGGTGATGATGGACTTGTTAATAATGGTGTTGTAACTAGTTTCGAGAGTTTTATGTGGAATTACTAG 774 0.4302 MRVSPQNSETESTSNSSPYTTNSIQEDQESNNKKLKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKSAILNFPHLRDSLPKPVSLAPRDVQAAAAKAAQMDIGKFELSSSSSSLSSLSTSSLTTMSTSTSLLMKTTKTLSSSADLSATSEELSEIIELPTLENGYDDVGKEEFVYVDSQAQDYAWMMYQQPMTWLQTTQEEDGCCVGDDGLVNNGVVTSFESFMWNY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0008 257 MobiDBLite consensus disorder prediction 29 47 - -
Mtr1g0008 257 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 MobiDBLite consensus disorder prediction 1 47 - -
Mtr1g0008 257 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Mtr1g0008 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 255 - -
Mtr1g0008 257 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 MobiDBLite consensus disorder prediction 1 28 - -
Mtr1g0008 257 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 255 - -
Mtr1g0008 257 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Mtr1g0008 257 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0008 Mtr-Chr1 106767 107774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0008 7 236 AP2-EREBP Transcription Factor Family AT5G11590 53.419 1.01e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0008 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0008 K09286 - gmx:100305349 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4086 3 54619390 54620448 Mtr1g0008 1 106767 107774 PCT