Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0005 ATGGCCAAAATCACTTTAGGAACAACCCAAGAGGCTGCTCAACCTAATTGCATCCAGGCTCTAATTGTTGAATTTATTGTCACCTTTCTCTTTGTCTTTGCTGGTGTTGCTTCTAAAATGGCTGCTGATAAGCTAAGTGGAGATGGTTTAGTGGGATTATTTTTTGTGGCTATGGCAAATGTTCTTCTGGTGGCGGTAATGATATCTGCCGGTCACGTTTCCGGTGGCCATTTGAATCCCGCTGTGACCTTCGGCCTCCTTGTTGGCGGCCACATCACCGTCGTCCGTTCTATCTTATATTGGATTGATCAACTTATAGCATCTGCAGGAGCTTGCTATCTTCTTCATTACCTCACTGGTGGATTAACAACTCCGGTTCATACACTTAAAAGTGGAGTAGGGTGTACTCAAGGAGTAGTTTGGGAAATTGTTTTGACATTCTCTTTGTTGTTCACTGTGTATGCAACTATGGTTGATCCAAAGAAAGGAGGATTTGCTGGACTTGGCCCAATTTTGATTGGATTTGTTGTAGGGGCTAACATCTTGGCTGGCGGGGCTTTTGCAGGTGCTTCCATGAATCCAGCAAGATCTTTTGGGCCTGCTTTGGTTAGTGGAAATTGGACTGACCAATGGATTTTTTGGGTTGGGCCTCTCATTGGTGGTGGACTTGCTGGTTTCATTTATGAGAATTTCTTCATCAATAGAACTCATGTTCCTCTGCTTGTAGATGAAGTTAGCTACTAA 744 0.4368 MAKITLGTTQEAAQPNCIQALIVEFIVTFLFVFAGVASKMAADKLSGDGLVGLFFVAMANVLLVAVMISAGHVSGGHLNPAVTFGLLVGGHITVVRSILYWIDQLIASAGACYLLHYLTGGLTTPVHTLKSGVGCTQGVVWEIVLTFSLLFTVYATMVDPKKGGFAGLGPILIGFVVGANILAGGAFAGASMNPARSFGPALVSGNWTDQWIFWVGPLIGGGLAGFIYENFFINRTHVPLLVDEVSY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0005 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
Mtr1g0005 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Mtr1g0005 247 SUPERFAMILY Aquaporin-like 12 241 IPR023271 -
Mtr1g0005 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Mtr1g0005 247 Pfam Major intrinsic protein 14 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr1g0005 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0005 Mtr-Chr1 82519 86603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0005 1 244 Major Intrinsic Protein MIP AT2G25810 75.410 3.52e-128 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0005 K09873 - gmx:100793258 388.652