Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0003 ATGGAAAAGGTTGTTGGAGGAAAGTATAGAATTGGTAGGAAAATTGGCAGTGGATCATTTGGTGAAATTTATATTGGGGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAAGAAGAAAACTCAACAACCACAGCTACTATATGAGGCAAAGTTATATAACATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGACGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGCCCGAGTCTCGATGACCTGCTTTACTACTGCAGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTAGCCGATCAAATGCTTACGAGGATAGAGTATTTACATTCCAAAGGATTACTACACAGAGATATCAAACCAGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAACCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATACAGGGATCCTATCAGTTACAAGCATATTCCTTACAGAGAGAACAAAAACTTAACAGGAACTGCACGTTATGCAAGTAGCAATACTCACAAAGGAATTGAGCAAAGCCGCAGAGATGATTTGGAGTCTCTTGGTTATGTTCTTTTGTACTTTTTGAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATATGCGAAACGAAGTTAAACACTCCCATTGAGGTACTTTGCAAGTCATGCCCCGTGGAGTTTGCTTCTTACTTTCATTATTGCCGCTCCTTGACATTTGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGCTGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGATAAAGGAACAAAATCAATCAATAGCTCCAGTTGCCGTGCCTACCAGTCTTGAACCAGGGGATGTGGATGAGCATAGAGAATACAATGACTGTACTCAAAATGTTGTGCCAAAGCCAAAAATCTATACCGACCGTCCACGTGTGTGTATGAAGCTCAGGGTAGCTAACGTCGACAATCTTGATGATGAGATTCAAACAGATAAACAAAAAGTGAATACTGATTTGCCTATTTCCACTGTCATGCCTACGGAAGATGTTCCAAAACCAGAAACGACTGTGGAAACCTCAAACCCTAATGACGTGTTAGGGAGTAAATGTGGTGCTTCTGATGACTTGGTTCCTTCAATACGCCGAGTTTCATCCATCAATTAG 1272 0.4002 MEKVVGGKYRIGRKIGSGSFGEIYIGAHVVTSELVAIKKEKKKTQQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASSNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICETKLNTPIEVLCKSCPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYAADYLYDWTILKYQEIQQIKEQNQSIAPVAVPTSLEPGDVDEHREYNDCTQNVVPKPKIYTDRPRVCMKLRVANVDNLDDEIQTDKQKVNTDLPISTVMPTEDVPKPETTVETSNPNDVLGSKCGASDDLVPSIRRVSSIN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0003 423 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Mtr1g0003 423 Pfam Protein kinase domain 9 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0003 423 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 409 - -
Mtr1g0003 423 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Mtr1g0003 423 MobiDBLite consensus disorder prediction 379 401 - -
Mtr1g0003 423 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0003 423 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Mtr1g0003 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Mtr1g0003 423 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0003 423 PANTHER CASEIN KINASE-RELATED 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0003 Mtr-Chr1 71916 76544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0003 8 213 MAP Kinase Kinase Kinase AT1G54960 29.864 1.49e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mtr1g0003 Pkinase 4.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0003 K08960 - gmx:100782913 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4077 3 54554396 54560287 Mtr1g0003 1 71916 76544 PCT