Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi2000072g0001 ATGAGTTTCCCAGAAAACGATAGAGAGAAGAAGCTGATGAAGAATAAGAAAGGTTCTATACTTGAAATTTTCAGATATGCTGATTGGACTGATGTTGTGCTTATGTTGTTGGGTGCTTTGGGAGCAATAGGAGATGGTATGTCCACAAACGTTTTGCTTCTTTTTGCCAGCCGTATCATGAACAGCTTAGGTTATGGGAATACTCAACAAAAACAACAAAATAATCGTGGGAATTTTTCCATGGCCGAGGTTGACAAGTGCAGTTTATATTTTGTTTACTTGGGATTAGCGGTCATGGCATTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGGCAAGTATTGAGAATTCGGTACAAGTATTTGGAAGCTGTGCTAAGACAAGAAGTGGGATTCTTCAATTCGCAGGAAGCAACTACTTCTGACATCATAAACAGCATTTCTAAGGATACTTCTCTCTTCCAAGAACTTCTCAGTGAAAAGGTGCCTCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATAGCATTCTCAACGTACTTCTCATGGAGGCTAGCAATAGTATCATACCCAACACTGCTGCTTCTGATAATACCAGGAATGCTTTATGGGAAATACCTAATTTACCTGTCAAACAAGTCCCACAAGGAATATAGCAAGGCAAACGCCATAGTAGAGCAAGCTTTAAGCTCTATAAAGACTGTTTATTCGTTCACAGCAGAGGGAAGAATCATGGAGAGATATTCAGAAATACTTGAGAGAATCTCAAGGCTTGGACTCAAGCAAGGCATAGCCAAGGGTTTGGCTGTGGGAAGCTCTGGCTTGTCTTTTGCTATTTGGGCTTTTATGGCTTGGTATGGAAGTCGTTTGGTTATGTACAAAGCTGAAAGTGGTGGAAGGATTTATGCATCAGCCATTTGCTTCATCATGAGTGGACTATCACTTGGAGTTGCACTTCCTGACCTTAAGTACTTCACAGAAGCATCAGTTGCAGCATCAAGAATATTTGATATGATTGACAGGGTGCCAACAATTGATAGTGAAGACACAAGAGGGCTTGTGTTAGATTCCATAACTGGAAAGTTAGAATTCGAGCATGTGAAATTCACATACCCTTCACGTCCAGATACAATTGTTCTTAAGGATTTCAATCTCACAGTTGAACCTGGCACAACTGTGGCTCTTGTTGGTGCAAGTGGGAGTGGTAAATCCACAGCAATAGGATTAGTGCAGAGATTTTATGATGTAGATGAAGGTTTTGTGAAGGTTGATGGTATGGACATAAGAAACATACAGTTGAAATGGATAAGAGGGAAAATGGGACTTGTGAGTCAAGAACCAGCACTGTTTGGAACTTCAATAAAGGAGAATATTAGGTTTGGGAAGACAGATGCTACAATGGAGGAAGTAATTGCTGCAGCCATGGCTGCCAATGCTCATAACTTCATTAGGCAACTTCCTCAAGGTTATGAGACTAAAATTGGAGAAAGAGGGGCACTTTTATCAGGTGGACAAAAACAAAGAATAGCAATTGCAAGAGCCATCATTAAGAATCCAGTGATTCTCCTACTTGACGAAGCAACCAGTGCTCTTGATTCTGAATCAGAACTACTAGTTCAGAATGCACTTGATCAGGCCTCCATGGGAAGGACCACTTTGGTTGTTTCTCACAAGCTATCAACAGTTAGAAATGCAGACCTCATAGCAGTTGTCAATTGTGGCTGCATCATTGAAACAGGTACACACAACGAACTCCTCAACCAAGAAGATGGGCTCTATGCAAAACTAGCGAGGCTGCAATTCGGTTGCGAAGAACAGGTGCAGAACCCGGATCAGATTATTTCTTCTGTAGCAAGAAGCAGTGCTGGTAGACCAAGTACTGCAAGATCAAGCCCTTCAATTTTCCCAAAATCACCATTATTGCCTGATACTATCTCACCACTTGAGTCTCACCCTCCACCTTCTTTACACCGTCTTCTTTCTCTGAATTCCCCTGAATGGAAACAAGGTTTGGTTGGAAGCCTATCAGCTATAGCCTTTGGTTCAATTCAACCCATATATGCATTAACCATAGGGGGTATGATTTCTGCATTTTTTGTAGTAAGCCATGAGGAAATGCGCCATAGGATCAGAACTTATTCCTTTATTTTCTCTTCCTTAGCCCTTGCTTCTATAATTCTTAACCTCTTTCAACACTACAATTTTGCCTACATGGGAGAGAAACTAACAAAGAGAATCAGAATGCAAATGCTAGAAAAGATCTTAACCTTTGAAACTGCCTGGTTTGATGAGGAACAAAACTCTAGTGGAGCCTTATGTTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAGTCACTTGTCGCAGACCGCTTGTCTTTAATAGTTCAAACCACTTCTGCTGTCACAATCGCAATGATCATAGGGCTTATTGTGGCTTGGAAGCTTGCTCTTGTTATGATATCTGTACAACCACTTACAATACTTTGCTTCTATACAAGAAAAGTTCTTCTCTCCACACTTTCAACTAATTTTGTCAAGGCTCAGAATCATAGCACACAAATTGCAGTGGAGGCTGTTTATAATCATAAAATTGTGATTTCCTTTGGAAGCAACAAGAAAGTTGTGCAACTATTTGATGAAGCTCAAGAGGCACCTAGGAAGGAAGCTAGGAAGAAGTCTTGGCTAGCTGGGATTGGAATGGGTTCGGCTCAGTGCCTAACTTTCATGATATGGGCTTTGGATTTCTGGTATGGTGGGACATTAATGCAGAAAGGAGAAATATCAGCAGGGGATGTGTTCAAGACATTCTTTGTCTTGGTGAGCACAGGCAAAGTCATAGCTGAAGCTGGAAGCATGACTTCTGATCTTGCCAAGGGTTCAGCAGCAGTGGCATCTGTTTTTGCAATTCTTGATCGACAATCGTTAATCCCAAAGGGTGGGAGTGGCACAAATAATGGGAGTAAGTTGTTGAAAATGAGAGGAAAGATAGAGATGAAGGATGTTGATTTTGCTTACCCAAGCAGGCCAGGGACTCCAGTACTGAGAAAATTTTGTTTGGATGTGAAGTCAGGAACAAGTATAGGAGTGGTAGGGAAAAGTGGGAGTGGAAAATCAACAGTGATAGCTTTAATTCAGAGATTCTATGATGTTCAAAGAGGCTCTATCAAAGTGGATGGTATAGACGTAAGAGAAGTAGACATACAGTGGTACAGGAAACACACAGCACTTGTTAGCCAAGAACCTGTAATATACTCAGGAAGCATAAGAGATAACATCTTATTTGGGAAGCAAGATGCTACAGAAAGTGAAGTAGTGGAAGCTGCAAGAGCTGCTAATGCTCATGACTTCATTTCGTGA 3369 0.4126 MSFPENDREKKLMKNKKGSILEIFRYADWTDVVLMLLGALGAIGDGMSTNVLLLFASRIMNSLGYGNTQQKQQNNRGNFSMAEVDKCSLYFVYLGLAVMALAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFNSQEATTSDIINSISKDTSLFQELLSEKVPLFLMHSSSFISGIAFSTYFSWRLAIVSYPTLLLLIIPGMLYGKYLIYLSNKSHKEYSKANAIVEQALSSIKTVYSFTAEGRIMERYSEILERISRLGLKQGIAKGLAVGSSGLSFAIWAFMAWYGSRLVMYKAESGGRIYASAICFIMSGLSLGVALPDLKYFTEASVAASRIFDMIDRVPTIDSEDTRGLVLDSITGKLEFEHVKFTYPSRPDTIVLKDFNLTVEPGTTVALVGASGSGKSTAIGLVQRFYDVDEGFVKVDGMDIRNIQLKWIRGKMGLVSQEPALFGTSIKENIRFGKTDATMEEVIAAAMAANAHNFIRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVSHKLSTVRNADLIAVVNCGCIIETGTHNELLNQEDGLYAKLARLQFGCEEQVQNPDQIISSVARSSAGRPSTARSSPSIFPKSPLLPDTISPLESHPPPSLHRLLSLNSPEWKQGLVGSLSAIAFGSIQPIYALTIGGMISAFFVVSHEEMRHRIRTYSFIFSSLALASIILNLFQHYNFAYMGEKLTKRIRMQMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLIVQTTSAVTIAMIIGLIVAWKLALVMISVQPLTILCFYTRKVLLSTLSTNFVKAQNHSTQIAVEAVYNHKIVISFGSNKKVVQLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMIWALDFWYGGTLMQKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKGSAAVASVFAILDRQSLIPKGGSGTNNGSKLLKMRGKIEMKDVDFAYPSRPGTPVLRKFCLDVKSGTSIGVVGKSGSGKSTVIALIQRFYDVQRGSIKVDGIDVREVDIQWYRKHTALVSQEPVIYSGSIRDNILFGKQDATESEVVEAARAANAHDFIS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi2000072g0001 1122 Gene3D - 990 1122 IPR027417 -
Mibi2000072g0001 1122 CDD ABC_MTABC3_MDL1_MDL2 367 604 - -
Mibi2000072g0001 1122 MobiDBLite consensus disorder prediction 622 638 - -
Mibi2000072g0001 1122 SMART AAA_5 1027 1122 IPR003593 -
Mibi2000072g0001 1122 SMART AAA_5 393 585 IPR003593 -
Mibi2000072g0001 1122 MobiDBLite consensus disorder prediction 622 641 - -
Mibi2000072g0001 1122 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Mibi2000072g0001 1122 PANTHER ABC TRANSPORTER B FAMILY 6 722 - -
Mibi2000072g0001 1122 Gene3D - 356 609 IPR027417 -
Mibi2000072g0001 1122 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi2000072g0001 1122 SUPERFAMILY ABC transporter transmembrane region 658 975 IPR036640 GO:0005524|GO:0016020
Mibi2000072g0001 1122 SUPERFAMILY ABC transporter transmembrane region 23 350 IPR036640 GO:0005524|GO:0016020
Mibi2000072g0001 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1121 IPR027417 -
Mibi2000072g0001 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 605 IPR027417 -
Mibi2000072g0001 1122 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 339 - -
Mibi2000072g0001 1122 Gene3D ABC transporter type 1, transmembrane domain 22 913 IPR036640 GO:0005524|GO:0016020
Mibi2000072g0001 1122 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Mibi2000072g0001 1122 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi2000072g0001 1122 FunFam ABC transporter B family member 1 22 362 - -
Mibi2000072g0001 1122 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 980 - -
Mibi2000072g0001 1122 Pfam ABC transporter 384 533 IPR003439 GO:0005524
Mibi2000072g0001 1122 FunFam ABC transporter B family member 4 356 611 - -
Mibi2000072g0001 1122 Pfam ABC transporter transmembrane region 37 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi2000072g0001 1122 Pfam ABC transporter transmembrane region 679 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi2000072g0001 1122 Pfam ABC transporter 1021 1109 IPR003439 GO:0005524
Mibi2000072g0001 1122 FunFam Putative ABC transporter B family member 8 646 984 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi2000072g0001 2 611 Calmodulin-binding Proteins AT2G36910 35.048 3.19e-103 352