Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi2000031g0008 ATGTCCGCAAATTCTGAGGGCACTTCATCTGCATTGAATCGGTCCAATTCTCATGTTTTTGAGGACACTTCCCAGCTAGTTGACCATTCTACCCGGACTGCAGTATGTGCTCTCTGCCAAAAGGCCCTATCACCTGATATTGAGATAACAAATGATCTTGCACCCATTGGTGTATGTGGTGATTGTAAATTTTTATTACTTGAAGATTTTGGGACCCGTTCCCAAAACTCTCAAAGAATGCAAAGGGGAAGATCCTGGTACAGCAGTTCTGAATCAGTTGAGAATGGTTTATCACATCAGCTCCCCAGTTTGGCTAATTCTATGAGACAAAATCAATCCTTTGCATCTATGGAGGATGATCAGCTTGTCGATGGTGATACCCCCTCGCGGTTGTTGCAGTATGCTAGTAACCATACTACTCCTAGTGAGTCTCAAAGATGGAGGCGGGTTTTTTCTGATACTGATAGTGATGAATTTGATAATTGGGGTTCTCTTTATGGTGAGAATGAATCAAATGCAAGTGTTAGGCGCTATGGGGTCCCCACTGGCGAGACTGATTCCTTCTCTTTCAGTACCTATGGAGGTGATTCTGAAATATCTATGGATAGATATAGTTTTGTAGGCACAGGAATCTTAAATTTGCCAGATGACGGAGATGAGTTTGATAGTGACACTGATATAGATCCAATGCATGCTGGCCTTAGCCATTGGAATTCTGATGATATGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGGAGAATGGGAAGTGGCTGAGGAAGCTGAAGCCACTGCTCGCCTTCAAATATATTTTACCTCAAGTCCAAGTGAGAGAAGTGACCCCATTAATTGGGGCCCACAGTTTCATTTCCCTGAACCTGAGGAAATATTAAGTAGGAGAGTTAGGGATAGATGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGGCACATTCACCTCCTTATAGTGCAAATTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATTTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCTGTGACTTTTGTACATAATCTGCCGCGTATTGTTATAAGCAAAAAACATGAGAAGCATGATGAACTTGTATGTGCCATTTGCAAGGATGCCTTGGCCATAGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTATATCACACCTGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGAATATGAGGAAGGAAAGCGCAATATTGACATTAGAAATGACATCCATGAAGTGCAGCAGCTAGATGTGATGAATGGCAATTCTTCTGATGGAGCTGAAGCAAATGAAGAGGATGGTGCGAATCAAGGTGGAGTACAGCAAAGTGAGCTTGTGAGCATGGTTTCTGTGGATAATCCTTCTGCAGTGAGTGGCGGTAGAGGAAGATGGTTTTTCCTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTCTAGTTGAAGGTCATAGACAACTGGGCTGCCACAACTTACAGGGGCAAAATCAGCATCAGGTTAATGTTTCAGCCTCACCCAACCATAAAGAGGATAGAAGCAGAAGATGGTGGTGTTTTTTCTAA 1695 0.436 MSANSEGTSSALNRSNSHVFEDTSQLVDHSTRTAVCALCQKALSPDIEITNDLAPIGVCGDCKFLLLEDFGTRSQNSQRMQRGRSWYSSSESVENGLSHQLPSLANSMRQNQSFASMEDDQLVDGDTPSRLLQYASNHTTPSESQRWRRVFSDTDSDEFDNWGSLYGENESNASVRRYGVPTGETDSFSFSTYGGDSEISMDRYSFVGTGILNLPDDGDEFDSDTDIDPMHAGLSHWNSDDMEEEEEEEEEEGEWEVAEEAEATARLQIYFTSSPSERSDPINWGPQFHFPEPEEILSRRVRDRWQTYTDHSSNYLEEAHSPPYSANFGDYLDARQFEDLLEHLAENDNSRRGAPPAAVTFVHNLPRIVISKKHEKHDELVCAICKDALAIGTEVNQLPCSHLYHTCCILPWLSARNSCPLCRYELPTDDKEYEEGKRNIDIRNDIHEVQQLDVMNGNSSDGAEANEEDGANQGGVQQSELVSMVSVDNPSAVSGGRGRWFFLAAAPIVSLVGIVIVLWLGNPLVEGHRQLGCHNLQGQNQHQVNVSASPNHKEDRSRRWWCFF 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi2000031g0008 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 429 IPR013083 -
Mibi2000031g0008 564 MobiDBLite consensus disorder prediction 456 475 - -
Mibi2000031g0008 564 SUPERFAMILY RING/U-box 365 429 - -
Mibi2000031g0008 564 FunFam E3 ubiquitin-protein ligase RING1-like 343 429 - -
Mibi2000031g0008 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 242 427 - -
Mibi2000031g0008 564 SMART ring_2 382 422 IPR001841 -
Mibi2000031g0008 564 Pfam Ring finger domain 382 423 IPR001841 -
Mibi2000031g0008 564 ProSiteProfiles Zinc finger RING-type profile. 382 423 IPR001841 -
Mibi2000031g0008 564 MobiDBLite consensus disorder prediction 234 253 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi2000031g0008 15 564 C3H Transcription Factor Family AT5G01980 42.349 2.72e-120 362