Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi2000029g0002 ATGCCATTATTAATATTATCCATGTATATGTTTATAACAAGCGTATTTCTTATCAGTACAACAATCTTGAGAATTACTAACGTCTATTGTTCATGTTATTCTGCCAAACTCTATTTTGCCATGCCTTTGGTGGATATACATAAGTTAGATACTTTAAGCTTCTGTCTCGTGTGGTTCTTGGTGCCTACCGCCTGCATGATGCAGCTCATGTTGCTTCTTCTCTTTCTTTTTGCTCCGATCACAGTTCTTTCCGACGACCCAGCCTTCAACGACGACGTGTTGGGTTTGATTGTCTTCAAGGCGGGTTTGCAAGACCCGAAAGGTAAGCTCTCTACTTGGAACGAAGATGATAATAATCCCTGTAAGTGGGTTGGAGTCAAATGTGATCCAACGACCAATCGGGTCTCTGCCATTGTACTAGACGCCTTTTCTCTTTCTGGGCACATTGATCGAGGCCTCCTGAGATTACAGTCCCTTCAAATTCTCTCACTTTCCAAGAACAACTTCTCTGGGTCCATCAACCCAGATCTTCTTCGCCTTGGGAATTTGCAAGTATTGGACTTTAGTGAGAACAACCTCTCTGGGTCTATACCAGAAGGGTTCTTCCACCAATGTGGGTCCTTAAGATCAGTTTCATTTGCTAAAAACCATCTTAATGGTAAGATTCCTGATTTCTTGAGTTCCTGCTCCATGTTAGTAACTCTTAACTTATCTTCCAATCAGCTAAATGGGAATTTACCTTCTGGGATATGGTTTTTGAGACAACTACAGTCACTTGATCTGTCAAATAACTTGCTGGAGGGAGAGATTCCTGAGGGAATTAAGAATTTGTATGATTTGAAGGAGTTAAATCTGCAGAGAAATCGCTTCATTGGAAGGCTTCCTGGTGACATTGGAGGATGCATACTTTTAAAGTCACTTGATTTCAGTGATAATTTTCTCTCTGGGACAATCCCTGAGTCAATGCAGGGACTCAACTCCTGCACATCCGTCAATTTACGCGGTAATTTATTCACAGGAGCAGTTCCTGAGTGGATTGGAGAATTAAAAAATCTGGAGATGTTGGATCTTTCAGCAAATATATTTTCTGGTTGGATTCCAAAATCAATAGGCAAGCTCAACTCACTGAATGAATTAAATCTATCCCGGAATCATTTTACAGGAAGCATGCCGGAATCAATGGTAACCTGTGTTAAGCTTTTGGCTCTAGACATCAGCCAAAATCAGTTAGAAGGGCGTCTTCCCCCATGGATTTTCAGGATGGGCTCACAAAGTGTTTCACTTTCGGGGAACAGCTTCAATAGCAGCAATTATCCTTTATTTACCTCCACACCTGAATCTTATCATGGTCTTCAGGTTTTGGATTTGTCATCAAATGCGTTTTCTGGTGAACTTCCATCTAATATTGGGGACCTTAGTAGCTTGCAAGTATTAAATATGTCCGCTAACAATATCTCTGGTCCTATTCCAGCGGGTATAGGAGAACTTAAATCTTTATACATTCTTGACTTGAGTGACAACAAACTTAACGGAAGCATTCCTCCTGAACTAGAAGCGGCTGTTTCACTCAGTGAACTGCGGTTACAGAACAACTTCCTGAGTGGTGAAATCCCAGCCCAAATCGAAAAGTGCTCTTTGCTAACAACTTTGATTCTTTCTCACAACAAACTTACTAGTTCAATCCCAGCAGCCATTGCAAACCTGACTAATCTTCAGTATGTGGACTTGTCATGGAATGAACTCTCTGGAAGCTTGCCCAAGAATCTCTCAAATCTTTCCCACCTTTTATTTTTTAATGTCTCCTACAATCACCTTCAAGGGGAGCTACCAGTGGGCGGCTTCTTCAATGTCATCTCTCCCGCATCTGTCGCCGGTAATCCATCCTTATGTGGTTCTGTTGTCAATCACTCCTGCCCTTCAGTCCATCCCAAGCCTATTGTTCTGAACACCAATTCTTCTTACTCCAACTCCAACTCCTCCTCTCAAAACCATGGTCATAAAAAGATCATACTAAGTATTTCTTCTCTTATTGCTATTGGTGCTGCTGCTTTTATCACTATTGGTGTGGTGGCCATTACTGTCCTAAATGCCCATGTTCGTCATTCAATGTCTCATTCTGCTGCCCCATTTGCATTATCTGGTGGTGAGGAGTATAGTTGTTCCCCTGCAAATGATCCAAACTATGGCAAGCTTGTTATGTTTTCTGGTGATGCTGGTTTTGATGATGGGGCAAATAATCTCCTAAACAAAGACAGTATAATAGGTCGTGGTGGATTTGGAATTGTTTATCACACTGTCCTTCGAGATGGGAATTCTGTTGCAATCAAGAAGCTTACAGTCTCTGGATTGATCAAGTCACAAGAAGACTTTGAGAGGGAAGTGAAAAATCTTGCGACAGTCAAACACCAGAATCTTGTGGGACTTAAAGGGTATTACTGGACTTCATCCTTGCAGCTCCTTATTTATGAGTATCTATCCAGAGGGAGTCTGCATAAGCTTCTACATGAAGAAGACGAGCATAGCAGCAACATGCTTTCTTGGCGACAAAGGTTCACGATTATTCTTGGAATGGCGAAGGGGTTGGCTCATTTGCATCAAATGAATGTAATTCACTACAATCTAAAATCAACAAATGTTTTGATTGATTGCTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAGGCTGTTGCCAGTGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTGGGTTACATGGCCCCTGAGTTTGCATGCCGGACAGTGAAGATAACTGAGAAATGTGATGTGTATGGTTTTGGGATCATGGTTCTTGAGGTGGTGACCGGGAAAAGGCCTGTGGAATACATGGAGGATGATGTGGTTGTTTTGTGTGATATGGTAAGGGGTGCATTGGAGGAAGGCAGGGTGGAGCAATGTGTGGACGGGAGGCTTCTGGGTAATTTTGCTGCTGAGGAAGCGATCCCTGTCATAAAATTGGGATTAATTTGTGCATCACAAGTGCCTTCAAACCGCCCAGATATGGCCGAGGCTGTTAATATCTTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 3102 0.422 MPLLILSMYMFITSVFLISTTILRITNVYCSCYSAKLYFAMPLVDIHKLDTLSFCLVWFLVPTACMMQLMLLLLFLFAPITVLSDDPAFNDDVLGLIVFKAGLQDPKGKLSTWNEDDNNPCKWVGVKCDPTTNRVSAIVLDAFSLSGHIDRGLLRLQSLQILSLSKNNFSGSINPDLLRLGNLQVLDFSENNLSGSIPEGFFHQCGSLRSVSFAKNHLNGKIPDFLSSCSMLVTLNLSSNQLNGNLPSGIWFLRQLQSLDLSNNLLEGEIPEGIKNLYDLKELNLQRNRFIGRLPGDIGGCILLKSLDFSDNFLSGTIPESMQGLNSCTSVNLRGNLFTGAVPEWIGELKNLEMLDLSANIFSGWIPKSIGKLNSLNELNLSRNHFTGSMPESMVTCVKLLALDISQNQLEGRLPPWIFRMGSQSVSLSGNSFNSSNYPLFTSTPESYHGLQVLDLSSNAFSGELPSNIGDLSSLQVLNMSANNISGPIPAGIGELKSLYILDLSDNKLNGSIPPELEAAVSLSELRLQNNFLSGEIPAQIEKCSLLTTLILSHNKLTSSIPAAIANLTNLQYVDLSWNELSGSLPKNLSNLSHLLFFNVSYNHLQGELPVGGFFNVISPASVAGNPSLCGSVVNHSCPSVHPKPIVLNTNSSYSNSNSSSQNHGHKKIILSISSLIAIGAAAFITIGVVAITVLNAHVRHSMSHSAAPFALSGGEEYSCSPANDPNYGKLVMFSGDAGFDDGANNLLNKDSIIGRGGFGIVYHTVLRDGNSVAIKKLTVSGLIKSQEDFEREVKNLATVKHQNLVGLKGYYWTSSLQLLIYEYLSRGSLHKLLHEEDEHSSNMLSWRQRFTIILGMAKGLAHLHQMNVIHYNLKSTNVLIDCSGEPKIGDFGLVRLLPVLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGIMVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEAVNILELIQCPSEGQEELE 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi2000029g0002 1033 ProSiteProfiles Protein kinase domain profile. 748 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi2000029g0002 1033 SMART serkin_6 748 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi2000029g0002 1033 Pfam Leucine Rich Repeat 255 277 IPR001611 GO:0005515
Mibi2000029g0002 1033 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 369 642 - -
Mibi2000029g0002 1033 SMART LRR_typ_2 568 591 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 373 397 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 472 494 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 253 276 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 277 301 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 496 520 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 180 204 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_typ_2 592 616 IPR003591 -
Mibi2000029g0002 1033 SMART LRR_sd22_2 568 594 - -
Mibi2000029g0002 1033 SMART LRR_sd22_2 304 327 - -
Mibi2000029g0002 1033 SMART LRR_sd22_2 496 519 - -
Mibi2000029g0002 1033 SMART LRR_sd22_2 180 203 - -
Mibi2000029g0002 1033 SMART LRR_sd22_2 253 276 - -
Mibi2000029g0002 1033 SMART LRR_sd22_2 349 375 - -
Mibi2000029g0002 1033 PRINTS Leucine-rich repeat signature 256 269 - -
Mibi2000029g0002 1033 PRINTS Leucine-rich repeat signature 496 509 - -
Mibi2000029g0002 1033 Pfam Leucine rich repeat N-terminal domain 90 129 IPR013210 -
Mibi2000029g0002 1033 Pfam Protein kinase domain 750 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi2000029g0002 1033 Gene3D Ribonuclease Inhibitor 90 248 IPR032675 -
Mibi2000029g0002 1033 Gene3D Transferase(Phosphotransferase) domain 1 825 1031 - -
Mibi2000029g0002 1033 SUPERFAMILY Protein kinase-like (PK-like) 750 1023 IPR011009 -
Mibi2000029g0002 1033 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 825 1028 - -
Mibi2000029g0002 1033 ProSitePatterns Protein kinases ATP-binding region signature. 754 777 IPR017441 GO:0005524
Mibi2000029g0002 1033 SUPERFAMILY RNI-like 315 616 - -
Mibi2000029g0002 1033 Gene3D Ribonuclease Inhibitor 352 641 IPR032675 -
Mibi2000029g0002 1033 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 90 368 - -
Mibi2000029g0002 1033 SUPERFAMILY L domain-like 115 368 - -
Mibi2000029g0002 1033 Gene3D Phosphorylase Kinase; domain 1 742 824 - -
Mibi2000029g0002 1033 Gene3D Ribonuclease Inhibitor 249 345 IPR032675 -
Mibi2000029g0002 1033 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Mibi2000029g0002 1033 Pfam Leucine rich repeat 329 386 IPR001611 GO:0005515
Mibi2000029g0002 1033 Pfam Leucine rich repeat 450 509 IPR001611 GO:0005515
Mibi2000029g0002 1033 PANTHER LEUCINE RICH REPEAT KINASE 2 280 1020 - -
Mibi2000029g0002 1033 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 742 824 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi2000029g0002 73 1030 Receptor kinase-like Gene Family AT5G01890 61.054 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Mibi2000029g0002 Pkinase 3.5e-41 CL0016