Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1805 ATGTCCTCACCTCACATCCAATCGCATTCGGACCACATTAACCCTTCGGTTCTCTCTCCCTCTTCGGTAGATCTCGTTTCCATGGACCTTGGAGGTGGTGGAGGACTTCGTAAGAGGGGAAGGCATGAAGCTTCCTTCAATGGCAATGGCGGCGGCGCCAAGAAATCCAGGCCAGAAATGGAGTCCTTTCCAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGTTGTCCATTTGGTGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCCCAGATGATTAATATTGGTACCAGTCCTGCACTTGCACAAGCTCCGAGAAATACAACTTTTCCGCCATCCTTTCCAGATGGCTCCTCCCCTCCTGCGGTTAAAACCCGCTTATGTAACAAGTACAATACTGCCGAAGGATGCAAATTTGGCGATAAATGCCACTTTGCGCATGGTGAGTGGGAGCTTGGAAAGCCGACAGTCCCATCATATGATGATCCTCGTTCCTTGGGACACATGCAAGGCAGGGTTGGTGGGCGGGTTGAGCCCCCTCCTCCTCATGGAGCTGCGGCCGGTTTTGGAGCCTCTGCTACAGCTAAGATTAGTATCAATGCTGCACTTGCAGGAGCAATCATCGGGAAAAATGGTGTTAATTCTAAGCAAATTTGCCGCGTGACAGGAGCAAAACTTTCGATACGGGATCATGACTCAGACCCAGGTCTCAAGAACATTGAGCTGGAGGGCAGTTTTGATCAGATCAAACAAGCTAGTGCTATGGTTCATGAACTTATTGTAAATGTTAGTTCTGTCTCTGGGCCTCCTCCGAAAGGCATTGCTGCACCACATGGCCATAACCCAGCTAGTAACTTCAAGACAAAACTGTGTGAAAACTTTGCTAAAGGATCTTGCACCTTTGGGGAAAGGTGTCATTTTGCACACGGAGCTGAAGAACTACGCAAGACTGGAATGTAA 999 0.4845 MSSPHIQSHSDHINPSVLSPSSVDLVSMDLGGGGGLRKRGRHEASFNGNGGGAKKSRPEMESFPTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINIGTSPALAQAPRNTTFPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPTVPSYDDPRSLGHMQGRVGGRVEPPPPHGAAAGFGASATAKISINAALAGAIIGKNGVNSKQICRVTGAKLSIRDHDSDPGLKNIELEGSFDQIKQASAMVHELIVNVSSVSGPPPKGIAAPHGHNPASNFKTKLCENFAKGSCTFGERCHFAHGAEELRKTGM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1805 332 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Mibi13g1805 332 Gene3D K Homology domain, type 1 199 295 IPR036612 GO:0003723
Mibi13g1805 332 ProSiteProfiles Zinc finger C3H1-type profile. 68 96 IPR000571 GO:0046872
Mibi13g1805 332 CDD KH-I 209 270 - -
Mibi13g1805 332 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 198 IPR045877 GO:0003729
Mibi13g1805 332 SUPERFAMILY CCCH zinc finger 69 94 IPR036855 GO:0046872
Mibi13g1805 332 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 323 IPR000571 GO:0046872
Mibi13g1805 332 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 162 IPR000571 GO:0046872
Mibi13g1805 332 MobiDBLite consensus disorder prediction 1 20 - -
Mibi13g1805 332 Pfam RNA-binding, Nab2-type zinc finger 73 93 - -
Mibi13g1805 332 Gene3D - 130 167 - -
Mibi13g1805 332 Gene3D - 296 330 - -
Mibi13g1805 332 Pfam KH domain 208 270 IPR004088 GO:0003723
Mibi13g1805 332 SUPERFAMILY CCCH zinc finger 297 328 IPR036855 GO:0046872
Mibi13g1805 332 ProSiteProfiles Type-1 KH domain profile. 205 269 - -
Mibi13g1805 332 SUPERFAMILY CCCH zinc finger 134 166 IPR036855 GO:0046872
Mibi13g1805 332 MobiDBLite consensus disorder prediction 29 67 - -
Mibi13g1805 332 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Mibi13g1805 332 SMART c3hfinal6 68 95 IPR000571 GO:0046872
Mibi13g1805 332 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Mibi13g1805 332 FunFam Zinc finger CCCH domain-containing protein 293 329 - -
Mibi13g1805 332 ProSiteProfiles Zinc finger C3H1-type profile. 298 325 IPR000571 GO:0046872
Mibi13g1805 332 SMART kh_6 204 274 IPR004087 GO:0003676
Mibi13g1805 332 FunFam Zinc finger CCCH domain-containing protein 130 167 - -
Mibi13g1805 332 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 196 278 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1805 Mibi-ChrMibi13 34143654 34148253 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi13g1805 KH_1 6.3e-10 CL0007