Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1799 ATGCGTCGGTGGCTTTGTTGTGCTCGTCACGTGGAAGACTCATACCAACCACATGAAAATGAGCACATGAAAAGCCCTTATGGATATGATGACCAAAGAGTAAGAACGTCAGCTCCCGTCAAACAGGAACCTCCAAAGTCTGCACCACCACCTATTGAAGTGCCAGAATTATCTTTAGAGGAGCTAAAGGAAAAGACTGACAACTTTGGGTCAAAGGCTTTGATTGGTGAAGGATCTTATGGAAGAGTATATTATGCAACCTTAAATAATGGTAAAGCTGTTGCTGTGAAAAAGCTTGATGTTTCATCTGAAGATGAATCAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTGTCAAGGTTGAAGCATGAGAATTTCGTTGAGTTGCACGGTTATTGTGTTGAGGGAAATATGCGTGTACTGGCATATGAGTTTGCAACTATGGGCTCACTTCATGACATATTGCATGGTAGAAAGGGAGTTCAGGGGGCACAACCTGGGCCAACTCTTGACTGGATGCAGCGGGTGAGAATTGCAGTAGATGCGGCAAGAGGATTGGAATATTTGCATGAGAAAGTTCAACCCTCGGTTATACACAGAGATATCAGATCAAGCAACGTGCTTATTTTTGAAGATTACAAGGCAAAGATAGCTGATTTTAATCTTTCCAATCAGGCCCCTGACATGGCTGCTCGCCTTCATTCTACTAGAGTTTTGGGAACATTTGGTTATCATGCCCCAGAGTATGCAATGACTGGCCAATTGACACAAAAGAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCGGTTGATCATACCATGCCTCGTGGACAGCAAAGCCTTGTTACATGGGCTACGCCAAGACTGAGTGAAGATAAAGTTAAACAATGTGTGGACCCAAAATTGAAGGGAGAATACCCCCCGAAAGGGGTAGCTAAGCTTGCCGCAGTTGCAGCACTGTGTGTGCAATACGAGTCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCCCTTCAACCACTTCTGAAGGCCCCTGCTCCTACCCCCGAGTCTTGA 1083 0.4423 MRRWLCCARHVEDSYQPHENEHMKSPYGYDDQRVRTSAPVKQEPPKSAPPPIEVPELSLEELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEDESNVEFLTQVSMVSRLKHENFVELHGYCVEGNMRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVDAARGLEYLHEKVQPSVIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKAPAPTPES 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1799 360 PIRSF ILK 28 355 - -
Mibi13g1799 360 ProSiteProfiles Protein kinase domain profile. 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1799 360 MobiDBLite consensus disorder prediction 16 51 - -
Mibi13g1799 360 ProSitePatterns Tyrosine protein kinases specific active-site signature. 197 209 IPR008266 GO:0004672|GO:0006468
Mibi13g1799 360 Gene3D Phosphorylase Kinase; domain 1 42 145 - -
Mibi13g1799 360 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Mibi13g1799 360 SMART tyrkin_6 69 347 IPR020635 GO:0004713|GO:0006468
Mibi13g1799 360 Pfam Protein tyrosine and serine/threonine kinase 74 347 IPR001245 GO:0004672|GO:0006468
Mibi13g1799 360 FunFam PTI1-like tyrosine-protein kinase 3 147 356 - -
Mibi13g1799 360 Gene3D Transferase(Phosphotransferase) domain 1 147 355 - -
Mibi13g1799 360 SUPERFAMILY Protein kinase-like (PK-like) 46 347 IPR011009 -
Mibi13g1799 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 355 - -
Mibi13g1799 360 FunFam PTI1-like tyrosine-protein kinase 3 31 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1799 Mibi-ChrMibi13 34040277 34049472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1799 47 348 Receptor kinase-like Gene Family AT4G02010 50.164 4.26e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Mibi13g1799 PK_Tyr_Ser-Thr 4.6e-48 CL0016