Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi13g1777 | ATGCTATTAAATTGGATCTTTCTTATAACTCTGCAATACGCTCCAATCAGTGCCGTTTGGTTTGACCAAGAATCCCTATTTTCCTCACTTCTTCGTAGGTACTTACTTCACTGTTCTCTCTCCTCCATACGAAGCACCATTCCAGTAAATAAATCTGAAGGGTTATTTAGCCCCAAAACCCTAGCTTTCAGTTCAGCCATCATGAACTGCTGCATCTCCGGCGAGGTGCCCGAAGAGCCTGTAGTGTCGAAGAAGTCTGGGTTGCTCTATGAGAAGCGTTTGATTGAGAGGCACATTGCGGACTATGGAAAGTGTCCAATTACTGGAGAACCTCTTGCTTCAGATGACATTGTTCCCATAAAAACAGGCAAGATAGTGAGGCCGAGGCCTGTACAAGCAGCAAGTATCCCGGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTGTCTAATTTTGCATTGGAACAGCAATTACACACAGCAAGGCAAGAGCTTAGTCATGCTCTATATCAACATGATGCGGCTTGCCGAGTGATTGCAAGGCTTAAAAAGGAAAGGGATGAAGCAAGGTCATTACTTGCACAAGCAGAAAGGCAGTTCCCTGTTTCCACACAAAACATAATGACAGCAAATGCTGTTGCTATGAGCAATGGGAAAAGAGCTGCTGAAGATGATGAGCAGGCCCCTGGTGGGAAAAAATTACATACTGGAATCACTTCTGCCATAATTGATGAGCTGACTGAGTGTAATGCTTCCCTGTCACAACAGAGGAAGAAGCGGCAGATCCCTGCAACTTTGGCTCCTGTTGAGGCTTTAGAAGGATATACCCAGATATCCAGTCACCCCTTTCACAAAACGAGCAAACCAGGCATTGTATCTATGGATATCCTTTATTCTAAGGACTTAATTGCCACTGGAGGGCTAGATACAAATGCTGTGATTTTTGACCGGCCATCAGGGCAGATATTATCCACACTCAGTGGTCACTCAAAAAAGGTTACAAGTGTGAAATTTGTAGCTCAGGGTGATCAGTTTATAACCGGTTCAGCTGACAAGACAGTTCGTTTGTGGCAAAGCTCAGATGATGGTAACTATATCTGCAGACATGTATTGAAGGATCATACAGCTGAGGTGCAAGCAGTCACTGTCCATGCTACCAACAACTACTTTGTCACTGCTTCTCTTGACAACACATGGTGCTTTTATGAACTTTCTACAGGAACATGTCTCAATCAGGTTTCAGACTCTTCTGGATCTTCTGGAGGCTATACGTCTGCAGCTTTTCATCCTGATGGTCTTATTCTAGGAACTGGCACTGCCGAAGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACACGTAGGGGCTGTAACCGCTATATCCTTTTCTGAGAATGGCTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAAACTATGGGATCTACGTAAATTGAAAAACTTCCGGACTTTCTCTCCATATGATCCAGACACTCCGACAAATTCAGTGGAATTCGACCATAGCGGTTCCTACCTTGCTGTTGCAGGGTCTGATGTAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAATTGTATTAAAACTTTCCCTGATTTGTCAGGAACAGGGAAAGCCACATGCGTTAAATTTGGCCCTGATGCAAAATATGTGGCTGTTGGATCAATGGACCGTAATCTTCGGATATTTGGCCTGCCCAGTGAAGATGGTCCTACTGAGACATAA | 1779 | 0.4401 | MLLNWIFLITLQYAPISAVWFDQESLFSSLLRRYLLHCSLSSIRSTIPVNKSEGLFSPKTLAFSSAIMNCCISGEVPEEPVVSKKSGLLYEKRLIERHIADYGKCPITGEPLASDDIVPIKTGKIVRPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSTQNIMTANAVAMSNGKRAAEDDEQAPGGKKLHTGITSAIIDELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPFHKTSKPGIVSMDILYSKDLIATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGDQFITGSADKTVRLWQSSDDGNYICRHVLKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSTGTCLNQVSDSSGSSGGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDPDTPTNSVEFDHSGSYLAVAGSDVRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYVAVGSMDRNLRIFGLPSEDGPTET | 592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 419 | 460 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 65 | 584 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Mibi13g1777 | 592 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 127 | IPR013083 | - | |
| Mibi13g1777 | 592 | CDD | WD40 | 293 | 581 | - | - | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 374 | 415 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | Coils | Coil | 182 | 202 | - | - | |
| Mibi13g1777 | 592 | Pfam | Prp19/Pso4-like | 133 | 198 | IPR013915 | - | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 329 | 361 | - | - | |
| Mibi13g1777 | 592 | SMART | Ubox_2 | 67 | 133 | IPR003613 | GO:0004842|GO:0016567 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 541 | 582 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 322 | 361 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 454 | 492 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 409 | 451 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 367 | 406 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 495 | 534 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SMART | WD40_4 | 277 | 319 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | FunFam | pre-mRNA-processing factor 19 | 266 | 583 | - | - | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 461 | 494 | - | - | |
| Mibi13g1777 | 592 | ProSiteProfiles | U-box domain profile. | 63 | 137 | IPR003613 | GO:0004842|GO:0016567 | |
| Mibi13g1777 | 592 | SUPERFAMILY | RING/U-box | 68 | 120 | - | - | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 329 | 361 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 419 | 454 | - | - | |
| Mibi13g1777 | 592 | FunFam | Pre-mRNA-processing factor 19, putative | 68 | 125 | - | - | |
| Mibi13g1777 | 592 | Pfam | WD domain, G-beta repeat | 542 | 581 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | Pfam | WD domain, G-beta repeat | 457 | 492 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | Pfam | WD domain, G-beta repeat | 323 | 360 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | Gene3D | - | 269 | 583 | IPR015943 | GO:0005515 | |
| Mibi13g1777 | 592 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 461 | 501 | IPR001680 | GO:0005515 | |
| Mibi13g1777 | 592 | SUPERFAMILY | WD40 repeat-like | 290 | 581 | IPR036322 | GO:0005515 | |
| Mibi13g1777 | 592 | CDD | RING-Ubox_PRP19 | 70 | 121 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi13g1777 | 68 | 587 | U-box Gene Family | AT1G04510 | 74.423 | 0.0 | 822 |