Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1647 ATGGGGCCTATTATGGGACATACAGTGCATTACAAATTCATGATCATTACACTTCAACAAGATGGAATGGCAGATCTTGCTAGTTATGGGAATTCTGAGCGTGACATTGATCAAGCAATTGTAGCTTTAAAAAAAGGCTCTCAATTACTAAAGTATAATCGGAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCACCTGATGCTTCAACATTGATTTGGATTTCTCATGGACGGGAAAAATATATAAGGTTGTCTTCTGTTTCACGTATTATCCCTGGACAAAGAACTGCTGTATTTAGAAGGCACTTGCTCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAAAAACGGGGAACGAACACTTGATCTGATTTGCAAGGACAAAGCTGAGGTAGAGGTATGGTTTGGTGGCCTGAAGGCTTTAATTTCTCCTGGACAACACGCCCTACGATCTAAAAGTAACTTATATGATGTACAGGTTGGTGTTGATTTCTCCCCAATTAGTCGTCCTTTTGGTGCAACATTAGAGTTTGCTTCTAGCATTGCACGTGGCAGGGATTCCATAGATTCTCCCTTGAATTGGGCAACCTCAAATGTGGCATCAGAAGGTCCAAATATGCAACAAAGGACAAGTGCTTCAGATGGCTTTCGTGTAAGTGTGTCAAGCACACCAAGTTGTTCAAGTGTAGGATCAGGACCAGATGACATAGAGTCACTAGGTGACGTGTATATATGGGGAGAGGTCTGGAGTAATGGGGCATCACCTGATGCCTGGATAACAGATGTGCTGGTTCCTAAGCCATTAGAATCCAATGTTGTTCTTGATGTTCAACAGATTGCATGTGGTGCACATCACATTGCGCTGGTTACGAGGCAGGGAGAGGTGTTTTCTTGGGGTGAGGAATCCGGGGGAAGACTTGGACATGGGATCGATAAAGATTTCTGTCACCCACATCTGATTGAGTTCCTCTCTGTTCAAAATGTTGACTATATTGCATGTGGGGAGTATCATACATGTGCTATTTCTTCGTGGGGTGATCTGTTCACATGGGGAGATGGTGCTCATAATGTTGGCCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATCCCAAAGAGAGTCACTGGCCCTTTAGAAGGTCTACAAGTTGTATCAATTGCATGTGGTTCCTGGCATTCTGCATTAGCAACCTCTAACGGGAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGCCATGGAGATCGGATCAGTGTATCATATCCAAGGGAGGTACAATCATTGAGCGGACTCAAGACTATTAGGGTTGCTTGTGGAGTGTGGCACACTGCTGCTATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCCGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCCACTTGTGTCTCTGCACTAATTGATTATAATTTCCTCCAAATAGCTTGTGGTCACACTTTGACTGTTGCCTTAGATACATCAGGTTCTGTATATACTATGGGTGGCACTGCATATGGTCAGCTTGGAAATACTTTGTCTGATGGAAAAACACCTACAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAAGAAATATCATGTGGAGCACATCATGTTGCTATCTTGACATCAAGAAGTGAAATATATACGTGGGGCAAGGGAGCCAATGGAAGACTGGGGCATGGTGACACACAAGACCGAAAATCTCCAACACTTGTTGAAGGCTTAAAAGATAGGCATGTTAGAAATATCTCATGTGGCTCAAACTTTACATCTTGCATATGCATCCATAAATGGGTCGCTGGATCTGATCAATCTCTTTGCTCTGGTTGTCGTCAAGCATTTGGCTTTACTAAAAAAAGGCACAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGTAGCTCCAAGAAGGCCTTGAGAGCTGCATTGGCTCCAACACCAGGAAAACCGCATCGTGTTTGTGATGCTTGTTATGGTAAGCTTAAAACTACTGAGACTGCCAGTGCTTCCACTTTTAATAGGAAATCTACCCCTCCTCGTCAATCCATAGATTGCAAGGAAAGATTAGATCGCCGCGAAGTAAGGTCTTCAAGAATTCTTGTGTCTTCCATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGAAATAAATCAGACTCTAAGAATGACTTTTCTCCCCTTGCCCAAACTCCTCAATCAAGTACACAATTCAGGCATGCTGTATTTCCAAGTTCATTGAAGCCCATTCATAATGCCTTCAGGCCTTCAAGTCCACCACCAACTCCACCAGCCAATTCAAGGCCTACATCTCCATATTCTAGTAGAAAATCAAGTCCATCACGTTCTCCCACCCCTGGATTTTCCAGAAGCATCGTTGAAAATTTGAGCAAGTCGAATGACCTTATGAACCAAGAACTCTCAAAATTACAAAATCAAATTAGAAGTTTGAAGCAGAAGAATGACATTCAAGATATGGAGATTCAGAAGCTGAAGAAAAATGTTCAGGAAGCTACCTTGTTGATTGGAGAGGAATCTTCTAAGCATATGCTAGCTACGCAATTTATTAAGAGCATGACAGATCAGTTGAAGGATGTGACAGAGAATTTGCCACCGAACAGTTCAGATAGTGAGATCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTGAGAGAAAATCTAGAATATGAGGCATCATCTTCCATACTTGCAAACATGCAGTCTAATCAAGAAATTGGACCTGATACACCAGCTTCAGATATTGATGGTTCTAAATTGCATGGACATAAACGTGAAGAAACCATTGATCCCGCTGGAGTTGAACCATCTCAAGATTCAGGAAATTCTCTTCAAGAAAGTAGATCATCTGTTTCTAGTACAGAGGAAGCCAGTCCTCCACAAAGCTTAGAAAGTGGTTTACAATCACCAGACCCTATGAGACCAGGTGGAGAAAAGGAAGTCACCGAACCATTTGAATCTGGTGTTTTTGTGACGCTAGTAGTAAGGCCAAATGGTATTAAAGTTTTCAAACGAGTTAGATTCAGCAAACGAAGGTTCGATGCACGCCAGGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGAACGTATAGTTCACCAACAACAAATCATGCAGCTACTGGGTCATCTTCATCTAGCACTCTAAGAGCGGAAGACAACATTGAACCTTCTTGA 3276 0.4206 MGPIMGHTVHYKFMIITLQQDGMADLASYGNSERDIDQAIVALKKGSQLLKYNRKGKPKFRPFRLSPDASTLIWISHGREKYIRLSSVSRIIPGQRTAVFRRHLLPEKDYLSFSLVYKNGERTLDLICKDKAEVEVWFGGLKALISPGQHALRSKSNLYDVQVGVDFSPISRPFGATLEFASSIARGRDSIDSPLNWATSNVASEGPNMQQRTSASDGFRVSVSSTPSCSSVGSGPDDIESLGDVYIWGEVWSNGASPDAWITDVLVPKPLESNVVLDVQQIACGAHHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVDYIACGEYHTCAISSWGDLFTWGDGAHNVGLLGHGSDVSHWIPKRVTGPLEGLQVVSIACGSWHSALATSNGKLFTFGDGTFGVLGHGDRISVSYPREVQSLSGLKTIRVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFLQIACGHTLTVALDTSGSVYTMGGTAYGQLGNTLSDGKTPTKVQDKLVGEFVEEISCGAHHVAILTSRSEIYTWGKGANGRLGHGDTQDRKSPTLVEGLKDRHVRNISCGSNFTSCICIHKWVAGSDQSLCSGCRQAFGFTKKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYGKLKTTETASASTFNRKSTPPRQSIDCKERLDRREVRSSRILVSSITEPVKFLEIWGNKSDSKNDFSPLAQTPQSSTQFRHAVFPSSLKPIHNAFRPSSPPPTPPANSRPTSPYSSRKSSPSRSPTPGFSRSIVENLSKSNDLMNQELSKLQNQIRSLKQKNDIQDMEIQKLKKNVQEATLLIGEESSKHMLATQFIKSMTDQLKDVTENLPPNSSDSEILRNIHAQAEDFLRENLEYEASSSILANMQSNQEIGPDTPASDIDGSKLHGHKREETIDPAGVEPSQDSGNSLQESRSSVSSTEEASPPQSLESGLQSPDPMRPGGEKEVTEPFESGVFVTLVVRPNGIKVFKRVRFSKRRFDARQAEEWWNKNKDRVLRTYSSPTTNHAATGSSSSSTLRAEDNIEPS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1647 1091 Gene3D - 463 622 IPR009091 -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 793 815 - -
Mibi13g1647 1091 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Mibi13g1647 1091 PRINTS Chromosome condensation regulator RCC1 signature 279 292 IPR000408 -
Mibi13g1647 1091 SUPERFAMILY RCC1/BLIP-II 242 622 IPR009091 -
Mibi13g1647 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 81 881 - -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 958 1015 - -
Mibi13g1647 1091 CDD FYVE_like_SF 631 683 - -
Mibi13g1647 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 778 792 - -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 773 815 - -
Mibi13g1647 1091 Gene3D - 200 462 IPR009091 -
Mibi13g1647 1091 SMART fyve_4 619 688 IPR000306 GO:0046872
Mibi13g1647 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 699 IPR013083 -
Mibi13g1647 1091 FunFam PH, RCC1 and FYVE domains-containing protein 1 214 456 - -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Mibi13g1647 1091 Pfam Pleckstrin homology domain 38 145 IPR001849 -
Mibi13g1647 1091 CDD PH_PLC_plant-like 34 146 - -
Mibi13g1647 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 282 292 IPR000408 -
Mibi13g1647 1091 SUPERFAMILY PH domain-like 36 145 - -
Mibi13g1647 1091 ProSiteProfiles BRX domain profile. 1010 1065 IPR013591 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 516 564 IPR000408 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 402 451 IPR000408 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 467 513 IPR000408 -
Mibi13g1647 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 348 398 IPR000408 -
Mibi13g1647 1091 Coils Coil 817 858 - -
Mibi13g1647 1091 SUPERFAMILY FYVE/PHD zinc finger 621 691 IPR011011 -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Mibi13g1647 1091 Pfam Transcription factor BRX N-terminal domain 868 902 IPR027988 -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 966 999 - -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 243 295 IPR000408 -
Mibi13g1647 1091 MobiDBLite consensus disorder prediction 1063 1091 - -
Mibi13g1647 1091 Gene3D - 35 152 IPR011993 -
Mibi13g1647 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Mibi13g1647 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 1009 1064 IPR013591 -
Mibi13g1647 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1647 Mibi-ChrMibi13 27996056 28007232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1647 1008 1073 Major Intrinsic Protein MIP AT1G31880 37.879 8.48e-08 53.9