Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1575 ATGAGTGATTTTGCGAGATCTAGAGAACCTGCTAAAGGAAGATTCGTGAGAATGGTGACCGAGAGAGGTGTGGGAGTGATGGGGAGAACCCATGGGGCTGAGGACAGGGGTGGAGTGAAACGACGTCGCAGCCTTCTCTCCATCATGAGATCTCGCTGGAGACGAAGCGGCAAGGCTGGTCACTTCAAAATTAGTCCTGGCGTGCATTTTGTGATCACGAAGAAGTCACGATTCGATTTCGAGATTCCTGAACCAGCAATTCGTATAGCCCTAAGGGAATCTCGATTCGACGAAGACGCTGCCGTGGAATATCTCAACAATAATCCCGGGCTTCTGGCCCGACCCGTCACAGTGGTTCGGGCCGTTACTACTAGCACTGGTTCTAGGGTTTTGGCTCCTTCGCCTGTAAAACAAGAATGTTCCGATGAATCTCAAATGTCCAGTGAAATGATTCTGAATAGCAAGGTGAAAAAGGAACCGATTCATTTGGTTTCTGAGGATCAAAACCCTGTGGGAGCTGAAAATGGTTCCGATGAAATCAGTCTCAAGAGCAAGAAAGAAAATGGTTCCGATGATTCTCATGAAGTGGCTAAACCGATTGAGGAGTTGAATGTGGAGAAGGGAGTGAACGAAGGAATCAATGTCGAGCCTGAGAAGAAGGTTCCTGAGAGAGAAGAATCTACTGGTATTAGGAAACCTTCATGGGAATCTCGATATGCGGAGTTTCTTAAGGCTACAAATACAAAAGTTATGTCAAAGGAAGAATATCAAAGAACATTGGAAGTGACGCAGGATTTGGCTTCTGTGGATAAGGTATTGGAGAAGAAACAAGTGACTACTACTACCCCTGATGCCGATGAAGTAACGATTGTCAAGGAAGTTGGTTCCTTTCCGGTTTTTCGGAAATGTTTGCAGGAGAAAAAGGGGAAAGTTGAACTTCCTAGGCCTCCGAATGTGGAGGATGGGGACTTTCCAGAATATTTAGACTGGTTTTTAGCGGGGAGGACTATAATCACTGCACTTTCAACTACCAAAGGGAGGAAATTAGTGGACAATGAGATTGTACACTTCGATTTCCGATCTGCATTTGCGAAACGCAACTCAAAATGGATTCTTCGCATTTCAACCAAGCGTTCTGGAGAGGTTGGACGGGTCAATATGGAATGGGCTAATGAGGTTGTCCAACTGGTTCGGTCTGCAAAAGTCAAGGTTATAGGTAGGTGCGTAGCTGCACCACCTGTCTTACATATGATGCAAGATGTCATGGTTTGTGTAAGCTTTTACATCCACCACAGCTCATTCACTTCAGAAGTCAATACTTCATGGAAGCTTGATGGTTCTACTTACATTGACCCTTCTGTTTATCCTCTTCCAACAGTGTTCAAATTGATAGAGTTGAAGCCATATCAGAACGCTGCTTTTACCCCAGAGGAACTTGATTCTAGGAAGCGTTGGTTCAGGGGTAATACAGTTGAAGATCCATCAGATTTGCCTGGTTTGAAACGGAGAAAGGGTTGTCCTCCTGATCAAGATGATGAACAAGCTGTGTCACAGTCATCTTTGAATAAGCTTGTTGGAGCAGCTGAAGCCTACGACTTGGAGGAAATGGAAGGGCCAAGCACATTGATGTGTGATCTAAAGCCTTACCAAAAACAAGCATTATATTGGATGTCAGAACTAGAGAAAGGAACTAATGCTCAGAATGCTGAAAGTACTGTTCATCCTTGCTGGGCATCCTATTGTATAAACGATGAGAGGGTTTCCACTATTTATGTAAACAACTTCACAGGGGAAGCAACAACAAAGCTGCCACCTGCATTTCGATTGCCAAGAGGAGGAATTCTCGCAGATGCTATGGGTCTTGGGAAGACTGTCATGACTATTGCTCTAATTCTTGCAAGACAAGGGAGAGGAGATAATGTTGGTCTTTCAAGGAAGAGAAGCCAAGTTTCTCATACTGACTCCACATTCAAAGTTGATGGCGGCACTCTTGTTGTCTGTCCCATGGCATTGCTAGGACAATGGAAGGACGAGCTTGAAACCCATTCCAAGCCAGGAAGTTTATCCATTTTTGTTCACTACGGTGGTGATAGAACCAATGATCCTCGGGTGATCTCAGGGCATGATGTTGTTTTAACAACTTATCGCGTCCTTGGAGATGCATATAAAACTTATAGAGAGAACAGCATTTACCATAAGGTCAACTGGCATAGGGTGGTCCTGGACGAAGCTCATTCCATTAAAGCCTACAAATCACATGCCGCATTAGCTGCTTTTACACTGACCTCACACTGCCGTTGGTGTCTTACTGGAACTCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCATGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCCATTTTGAAGCCATTGATGTTAAGGAGAACAAAGGAAACAAAGGATAAGTGCGGAAGACCCATCCTTGTTCTTCCTCCGATTGACATTCAATTGGTCGAGTGTGAACAGTCAATAGCTGAAGCTGAATTGTACAATGCCCTCTTCAGGAAATCTAAACAACAATTCGACCAGTATGTTGGACAAGGAAAAGTTCTCAGAAACTACGCCAACATTCTTGAGTTACTATTGCGGTTGAGACAATGTTGTAACCATCCGTTTCTGATCACAAGTCGAAGCAATTCAAAGAAACCGGTGGACTTTGACATACTTGCAAAAAGACTACTCGAGTTCAATTCTAATTCTATAAATCAGTGTGCATATGTTACAGAGGCCATAGAGGCTCTTCGCAAGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGTTCACTCCATGTGCACACAGAATGTGTAGGGAGTGCCTGCTTTCTAGCTGGAGTACCCAAATCAGTGGTCCTTGCCCTCTCTGTCGTCATACGCTAAACAAAACTGATCTAATCAATTGTCCATTTGAGAATCAGTTCGTGGTTTCTGATGTTGAGAAGGACTGGAAGGAGTCTACCAAGGTTTCAAAGCTTTTGGAATGCTTGGAGGCCATTGAGCGATATCACCCTACTGAAAAAAGCATCGTGTTCAGCCAGTGGACTGCCTTTTTGGACCTCCTGGAGATTGCTCTTAAGAAGAAAGGAATTGGGTATCTTAGATTTGATGGGAAACTGCAACAGAAGAATAGGGAAAGAGTTTTGAAGGAGTTTAATGAATCCAGAGAGGAAAGGGTATTGTTGATGTCACTTAAAGCTGGTGGAGTAGGCTTGAACTTGACTGCAGCCTCAAATGTTTTTATGATGGATCCATGGTGGAATCCTGCGGTTGAAGAGCAAGCAATTATGAGAATCCATCGTATAGGACAAAAGCGAACAGTTGAGGTTAGAAGATTCATTGTCAAGGATACGGTGGAAGAGAGGCTGCAACAAGTGCAGGCGAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGATGATGAGGTTCGGTCAGGTAGGATTGAAGACCTCATGATGCTGTTCAGTTGA 3585 0.4404 MSDFARSREPAKGRFVRMVTERGVGVMGRTHGAEDRGGVKRRRSLLSIMRSRWRRSGKAGHFKISPGVHFVITKKSRFDFEIPEPAIRIALRESRFDEDAAVEYLNNNPGLLARPVTVVRAVTTSTGSRVLAPSPVKQECSDESQMSSEMILNSKVKKEPIHLVSEDQNPVGAENGSDEISLKSKKENGSDDSHEVAKPIEELNVEKGVNEGINVEPEKKVPEREESTGIRKPSWESRYAEFLKATNTKVMSKEEYQRTLEVTQDLASVDKVLEKKQVTTTTPDADEVTIVKEVGSFPVFRKCLQEKKGKVELPRPPNVEDGDFPEYLDWFLAGRTIITALSTTKGRKLVDNEIVHFDFRSAFAKRNSKWILRISTKRSGEVGRVNMEWANEVVQLVRSAKVKVIGRCVAAPPVLHMMQDVMVCVSFYIHHSSFTSEVNTSWKLDGSTYIDPSVYPLPTVFKLIELKPYQNAAFTPEELDSRKRWFRGNTVEDPSDLPGLKRRKGCPPDQDDEQAVSQSSLNKLVGAAEAYDLEEMEGPSTLMCDLKPYQKQALYWMSELEKGTNAQNAESTVHPCWASYCINDERVSTIYVNNFTGEATTKLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDNVGLSRKRSQVSHTDSTFKVDGGTLVVCPMALLGQWKDELETHSKPGSLSIFVHYGGDRTNDPRVISGHDVVLTTYRVLGDAYKTYRENSIYHKVNWHRVVLDEAHSIKAYKSHAALAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPIDIQLVECEQSIAEAELYNALFRKSKQQFDQYVGQGKVLRNYANILELLLRLRQCCNHPFLITSRSNSKKPVDFDILAKRLLEFNSNSINQCAYVTEAIEALRKGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSTQISGPCPLCRHTLNKTDLINCPFENQFVVSDVEKDWKESTKVSKLLECLEAIERYHPTEKSIVFSQWTAFLDLLEIALKKKGIGYLRFDGKLQQKNRERVLKEFNESREERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVEVRRFIVKDTVEERLQQVQAKKQKMISGALTDDEVRSGRIEDLMMLFS 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1575 1194 CDD DEXDc_SHPRH-like 546 829 - -
Mibi13g1575 1194 SMART helicmild6 1058 1141 IPR001650 -
Mibi13g1575 1194 SMART ring_2 956 995 IPR001841 -
Mibi13g1575 1194 MobiDBLite consensus disorder prediction 486 510 - -
Mibi13g1575 1194 CDD RING-HC 956 995 - -
Mibi13g1575 1194 MobiDBLite consensus disorder prediction 179 195 - -
Mibi13g1575 1194 Gene3D - 845 1193 IPR027417 -
Mibi13g1575 1194 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1030 1190 IPR001650 -
Mibi13g1575 1194 FunFam DNA repair protein RAD5B 601 830 - -
Mibi13g1575 1194 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 791 IPR014001 -
Mibi13g1575 1194 CDD SF2_C_SNF 1025 1152 - -
Mibi13g1575 1194 Gene3D - 601 830 IPR038718 -
Mibi13g1575 1194 MobiDBLite consensus disorder prediction 486 516 - -
Mibi13g1575 1194 Pfam SNF2-related domain 549 907 IPR000330 GO:0005524|GO:0140658
Mibi13g1575 1194 ProSitePatterns Zinc finger RING-type signature. 971 980 IPR017907 -
Mibi13g1575 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 829 IPR027417 -
Mibi13g1575 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1186 IPR027417 -
Mibi13g1575 1194 Pfam Zinc finger, C3HC4 type (RING finger) 956 995 IPR018957 GO:0046872
Mibi13g1575 1194 Pfam HIRAN domain 338 423 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mibi13g1575 1194 ProSiteProfiles Zinc finger RING-type profile. 956 996 IPR001841 -
Mibi13g1575 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 920 1021 IPR013083 -
Mibi13g1575 1194 Pfam Helicase conserved C-terminal domain 1030 1141 IPR001650 -
Mibi13g1575 1194 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 328 1193 - -
Mibi13g1575 1194 SUPERFAMILY RING/U-box 951 1006 - -
Mibi13g1575 1194 MobiDBLite consensus disorder prediction 163 195 - -
Mibi13g1575 1194 SMART ultradead3 542 804 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1575 Mibi-ChrMibi13 26010600 26019047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1575 315 1193 RAD5 or RAD16-like Gene Family AT5G43530 63.263 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi13g1575 SNF2_N 3.5e-79 CL0023