Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1524 ATGGTAGGATTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTTACCAATCAGATTATAAAAACAGCTAATGCAGCATCTGAAGTTCTAGTTGAAAAAGAAGCTTTTAAGGTTCTTTCACAACACTTGTACGATATTGAACCGGTGCTGAAGGAATTACAGCTTCAAGAACTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGATGTAAAGAAGGCGAATAAAGTGATCGAGAAGTACAGGAACCGTGGTCGCTTTTACTTGCTGGTTAACTGCAGGCACATAGTTCATGAAGTTGAAGAAGTCACGAGAAGTATTGGCAAGTCCCTGGCTGTACTATCGCTTGCAAATACCGAAGTCTTATCACGAATTTCCGATCAGGTTGATAGGTTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGCATCACACTCTCAGCTTCAAATAGTGGAGAGGTTGGACCAGGGCCTAAGAGAGCAGAAACTAGACCAGGCTTTTGCAAATGACATGCTTGAAGAAATCGCCAGGGCAGTTGGAGTGCCAGTAGATCCCTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGATAAAGAAGAAGCTGCTGACAGGAAGGAAAGAGCTGAGGTCTTTTTCTTGGAGCAGGTCATTGAATTGCTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACCATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAAAAATATATAGAGCCGCTTAATTCTTTCCTTTGTTGTATAACCGGGACTGTTATGGTAGATCCAGTAAGCCTTTGCACTGGTACTACTTGTGAGAGAGATGCCATTGAGGCTTGGTTTGACAGTGGCATGAGGACTGACCCAGAAACTAAAGAAGTACTCGAAGATACCAAGTTGAGATCTAACGTTCCGCTTAGACAATCCATAGAGGAGTGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTGTAAAGGAAAACCTTCAGTCCAATTTGAACTCATCTGTGCTAGAATCCTTGAGACTAGTGCAGGATCTCGTAAGAGACAATTCTATAAACAAGGATTGGATTTCTATAGGTGGCCTCACTGACATTATTATCTCTATGCTTGGAAACACTGATTATGGAGAAGTGAAGATCAACATTTTGAGTACTTTGAATGATGCAGTAGAAGGGCACATGAGAAACAAGGAAAAAGTATCAGAATCTCGAGGATGGGATCACATCATTTGCTGCTTGGGCAGCGACTCTAGAATTTCAAAAGCTGCAATTAACTTGCTGTATGAGTTACTGCAAGATCGAACTGGTTGGAATGTGTCTCTCTGTAGAAAACTCTCTCAGCATCACAGTGCAATTTCTTTCCTTGTTACCCTTCGTAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGCAGAGAAGATTTTGATGGAGCTTTTTGACATAGATGAGGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTTGATCATATGGTTCAAGGAGTAGAATCTTCAAGAATATCAATGGCAAAAACCATTGTGAATATGGAGCTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATACCTTCATTGCTTGAAATGCTGTCTGGCAATATTGAATTGAAAGAAGTCTCGTTAGCTGCACTGGTTAAACTATCGGATTCTCGTGCCAATAAAAGGATTATTGCTGCATCTGGGGGAGTTCCTATCATTCTAGAACAAATATTTTCTCCTTCTATGCGAACTCTCATTACCATCAAATGCTCTGAAATCCTAGAGAAGCTTTCTGCTGATGATGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTTGAGTTAGATTCCATCATTATCAAATTACTTGCTCTTCAGCAGAGTTCCACATTAGCCTACAATATACGCAAGCCTTCTTTGCGTGCTCTTCTCGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCCGTCCTGGCTGCCAGTGGTGTATCTCAAATCCTCCCCCTTCTTGATGATTCTGATTTGGAAATCAGACAGACAGCCATAAACCTGCTCTTTCTTTTCTCCCAACATGAGCCAGAGGGAGTGGTTGAATACCTCTTCAGGCCGAGGAGGCTGGAGGCTTTGGTGGGATTCCTAGAGACCAATGACAATGATGTGCAAATGGCTGCTGCTGGTTTGCTAGCAAACCTACCGAAATCCGAGAAAGAGCTCACTATGAAGCTGATCGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGGACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACAAATATAGAGTCACAGCGTGATTTGGTAAAGCGTGGGATATATCCTTTGCTTGTGGATTTTCTCAACACCGGTTCAATTACAGCAAAGGCTAGAGCAGCAGCCTTCATTGGAGATCTTTCTATGACCACCCCAATGCTCACACTTGCTGCCAAATCACCTGGCTGCTGGTGTTTTAGATCATCAAGAGTTCATTTATGCCCTGCACATGGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTAGTAAATCTCTTATGTGGGGAGGTCGATGTAACTGCTTATGAAGCAATACAGACACTTTCAACATTGGTTTTGGAAGATTATCCTCAGAGGGGAGCTCATGTTTTGCATGAATCCAATGCTATAAAACCCCTTATGGATATTCTGACGTGGGGTTCTGATTCTCTTAAGGCTGAGGCTCTAGGACTCATGGAAAAGGTCTTTTTATCAAAGGAGATGGTGGAATTGCATGGCGCAACAGCTAGATTGCGTTTAGTTGGTTTGACGGGGATGAATATATATGGAGAAGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCAAGGTCATCATCTGCTGCTGTTTCAGGAGTTCTGGAGTGA 3048 0.4239 MVGLELIPVGTILAVLTNQIIKTANAASEVLVEKEAFKVLSQHLYDIEPVLKELQLQELNESQAARIALESLEEDVKKANKVIEKYRNRGRFYLLVNCRHIVHEVEEVTRSIGKSLAVLSLANTEVLSRISDQVDRLQNEMQRVEFEASHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVDPSEISKELASIRKDKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYHERLQVIERYNSREKYIEPLNSFLCCITGTVMVDPVSLCTGTTCERDAIEAWFDSGMRTDPETKEVLEDTKLRSNVPLRQSIEEWRELNYCLTIRSVKENLQSNLNSSVLESLRLVQDLVRDNSINKDWISIGGLTDIIISMLGNTDYGEVKINILSTLNDAVEGHMRNKEKVSESRGWDHIICCLGSDSRISKAAINLLYELLQDRTGWNVSLCRKLSQHHSAISFLVTLRKGPEEESAEIAEKILMELFDIDEVNISSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVIPSLLEMLSGNIELKEVSLAALVKLSDSRANKRIIAASGGVPIILEQIFSPSMRTLITIKCSEILEKLSADDDGIDFFVDREGKQLELDSIIIKLLALQQSSTLAYNIRKPSLRALLGICKFETGLVKKAVLAASGVSQILPLLDDSDLEIRQTAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETNDNDVQMAAAGLLANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSITAKARAAAFIGDLSMTTPMLTLAAKSPGCWCFRSSRVHLCPAHGSVCSVSNTFCLLEAQALPGLVNLLCGEVDVTAYEAIQTLSTLVLEDYPQRGAHVLHESNAIKPLMDILTWGSDSLKAEALGLMEKVFLSKEMVELHGATARLRLVGLTGMNIYGEGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1524 1015 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Mibi13g1524 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 589 IPR000225 GO:0005515
Mibi13g1524 1015 Gene3D - 337 647 IPR011989 -
Mibi13g1524 1015 Gene3D - 648 855 IPR011989 -
Mibi13g1524 1015 SUPERFAMILY RING/U-box 249 330 - -
Mibi13g1524 1015 SUPERFAMILY ARM repeat 874 957 IPR016024 -
Mibi13g1524 1015 Gene3D - 8 123 IPR036537 GO:0007166
Mibi13g1524 1015 Coils Coil 62 89 - -
Mibi13g1524 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 754 IPR000225 GO:0005515
Mibi13g1524 1015 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1007 - -
Mibi13g1524 1015 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Mibi13g1524 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Mibi13g1524 1015 Gene3D - 856 997 IPR011989 -
Mibi13g1524 1015 SUPERFAMILY ARM repeat 196 841 IPR016024 -
Mibi13g1524 1015 SMART arm_5 758 798 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 874 914 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 408 447 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 715 756 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 577 619 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 918 958 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 673 713 IPR000225 GO:0005515
Mibi13g1524 1015 SMART arm_5 537 576 IPR000225 GO:0005515
Mibi13g1524 1015 Coils Coil 127 154 - -
Mibi13g1524 1015 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1524 Mibi-ChrMibi13 23940482 23945327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1524 264 972 U-box Gene Family AT1G76390 27.201 1.39e-42 166