Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1489 ATGAATCGAGTAGTGAAGGAGGAGACTATTATGGAGGCGGCGGCTCCTCCACAGCCAATGGAGGGGTTACACGAAGTAGGTCCACCGCCGTTTCTGACAAAAACATATGACATCGTCGACGATGTTTCCACCAACCACATAGTTTCATGGAGCCGAGGTAACAATAGTTTCGTTGTCTGGGATCCACAATCCTTCTCTTTGACCCTCCTTCCCAGATTCTTCAAACACAGCAATTTCTCCAGCTTCGTTAGACAGCTTAATACCTATGGATTCAGAAAGGTTGATCCAGATAGGTGGGAATTCGCCAACGAAGGGTTTCTGAGAGGACAAAAGCATCTTTTAAAGAACATAAGGAGAAAGAAAACAACTCAACAACATCACAATCATCATCAAGCCCTAGATCCATGCGTGGAAGTAGGCCGGTTCGGGCTGGACGGAGAGGTGAACCGGCTCCGACGAGACAAGCAAGTACTCATGGTAGAACTTGTAAAACTCAGACAACAACAACAAAACACCAAAACCTACCTTCAACAAATGGAAAGTAGGCTCAAGAGGACTGAACAAAAGCAGCAACAAATGATGAATTTCTTAGCAAGAGCCATGCAAAACCCTAACTTTGTTCACCAGTTAGTTCAAAAAAAAGAATGGAAGAAGGAGCTTGAAGAAGCAATCTCAAAGAAGAGAAGAAGAACCATAGATCAAGGACCTAGTAGCAATAATAATGATGATGTTGAGTTATTAGTTGGTCACCAATTAGATTGCTCAGATTTCGTTGAAGAACTCGAACCTGATAATATTATTGCTGCTGAGGATTTGGATTTGATTGGCAAGTTAGAAAAAGATCAACAACATATAAATGAGTTGGTCCAAGTTGGGAATGAAAATATTATTAATAGAGAGGAAGAGATTATTAATGAGGATGAAGTGTTTTGGCAAGACTTGTTGAGCGAGGATGTTGAAGAAGTTGTAAGAAGTTTCGAGGAGGAGGAGGATGACGACGACGTTGATGTGTTGGCTGAACAACTAGGTTATTTAGCTTCTAATACACCTCATCAGTAA 1059 0.4155 MNRVVKEETIMEAAAPPQPMEGLHEVGPPPFLTKTYDIVDDVSTNHIVSWSRGNNSFVVWDPQSFSLTLLPRFFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTTQQHHNHHQALDPCVEVGRFGLDGEVNRLRRDKQVLMVELVKLRQQQQNTKTYLQQMESRLKRTEQKQQQMMNFLARAMQNPNFVHQLVQKKEWKKELEEAISKKRRRTIDQGPSSNNNDDVELLVGHQLDCSDFVEELEPDNIIAAEDLDLIGKLEKDQQHINELVQVGNENIINREEEIINEDEVFWQDLLSEDVEEVVRSFEEEEDDDDVDVLAEQLGYLASNTPHQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1489 352 Gene3D - 24 122 IPR036388 -
Mibi13g1489 352 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
Mibi13g1489 352 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 241 IPR027725 -
Mibi13g1489 352 FunFam Heat shock transcription factor 1 24 121 - -
Mibi13g1489 352 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi13g1489 352 Coils Coil 148 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1489 Mibi-ChrMibi13 22549658 22552488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1489 17 349 HSF AT3G22830 54.521 5.96e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi13g1489 HSF_DNA-bind 1.4e-31 CL0123