Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1448 ATGCCTTCTTCATCTTCTTCTTCACGGAGAATTCCTGGGAAAGGTATTCGTCGGATAGAGATGAAAAGGGTGGAAGATAGCAGCAAGCGTCTTGTCACCTTCTCTAAACGCAAATCGGGTCTTTTCCGTAAGGCCTCCCAGCTGTCTCTGCTGTTGAATCAGAGGTGCAGATCGATGGTCTTCGACGGAGAGGACGGAGGCGAGGTCAAGGATGGCGGTGGGAAGAAGTCTGAGAACATTGTCGAATTGGAGGAGGAGGAAGAAGATGGAGAAGTCCAAACCTTACCATTGCCAGAGAAGAATGCTAACATAATCGTGATGAAGGCTATGGAAAACGTGGCCTGA 345 0.4899 MPSSSSSSRRIPGKGIRRIEMKRVEDSSKRLVTFSKRKSGLFRKASQLSLLLNQRCRSMVFDGEDGGEVKDGGGKKSENIVELEEEEEDGEVQTLPLPEKNANIIVMKAMENVA 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1448 114 PANTHER MADS BOX PROTEIN 17 54 - -
Mibi13g1448 114 Gene3D - 26 94 IPR036879 GO:0003677|GO:0046983
Mibi13g1448 114 CDD MADS 17 51 - -
Mibi13g1448 114 SMART madsneu2 14 75 IPR002100 GO:0003677|GO:0046983
Mibi13g1448 114 SUPERFAMILY SRF-like 17 63 IPR036879 GO:0003677|GO:0046983
Mibi13g1448 114 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 62 IPR002100 GO:0003677|GO:0046983
Mibi13g1448 114 ProSiteProfiles MADS-box domain profile. 14 61 IPR002100 GO:0003677|GO:0046983
Mibi13g1448 114 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Mibi13g1448 114 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1448 Mibi-ChrMibi13 21551796 21553721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1448 15 110 MADS-box Gene Family AT5G65050 36.458 2.23e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi13g1448 SRF-TF 8.4e-12 No_clan