LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g1409	ATGGAACCTGGCATGAGATCCACTGGTCCTTCTGGGGTTGTGGTGAAGAGTAGGAACTCTTCGGGCTGTTTAATTGTTAGGAAGAAAGGAGATGATGGGTTTGGTGGTGGTGGGTATCGTTCTTCAAGCAGCTCTAGGAAGTTGTATGAATCAAATGTTAGGCAAAGGCATAGTATGGCTATGAGTGATTCAGAATCAAGTGATGACTTGCTGATGCCTCAAAGTAGAAGAAGGCTTGGTCCTGGGACTTTTCGGGCCTGTAATGGATTGACAGCTTCAGAGCGGGGTATAGTGGAAGGCGGTGAAATTGGGAGAAAGAAGGATAGAATGATGCATATCAGGCGTAGTGAGGGTGCTATGATTGAGGAGAATGGTTTGGAGCAGAGGAAAAGAAAAAAGACTAAAATGGAAGTGTTTGATTATGATGAACGTGATGGTATTGGTGTAGATAAGATGAAAAGGAGGCTTTTTTATGATAATGATGGAGCTGGTTTTGGGGGACGAAGGTTTATGGGACCAATGCATGCCACAAGAACTGGCTTTGAGAGTCAATTTGAAACAGGGTCTAGCAGACACACTCTTGATGATAGAAACAACTCCTATTATGGCGGGCATAATGGGTTGTATCTTGAAGATACTGTAGACCCCAGCAGGTTCCATGTGAATCGGGATGATGCTCGCCTACGTCAACCCTTGCTGAAAGATAAGTTTAAATCAAATGAGACCATCAGGGTTCAGGGAAAAAATGGAGTTCTAAAGGTTATGGTAAATAGGAATAGGGTGGGTGGTCCATCAGAGTACTATAATAACCACAAACCTATAGAAAATAGACAGAATTTGCTGACTGAGGCCCCAGTGAAGAGGAATATTCCAGCTCATTCTTCATCGTACTTAGATAATAAAATTGTTGAGAGGTCGGGTTTTGTTGTTAGGCCAAAGAAAAAATGGATAGCATCAAGAAAATCTCTGTCAATGAAGGACAGGGCCTCTGAGGACAGTGACACACCATTGAATCAAGGACCAGGAAATATGAAACCCTTCAAGTCTGTGAAGAGAGTAGATTCTGAGGATGAAAAGACTCCATTATGTGAGAAGCTCCCAACTACAGAAATAAAAGAAGGGAAAGAAGGGAAAGTAAGGCGTGGGAGTGGTACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGAGTTCTGGTTGGACTATAGATTATCGGCCTCGAAGGAACAGAGACTATCTAGATGCAGTTTACATCAATCCAGGGGGTACTGCCTACTGGTCAATTATAAAAGCATATGAGGCTCTTCAAAAGCAATTGAATGGTGATGATTATGAGGCTAAGCCTTTGGGTGATAGTTCTTCCTTTGCTCTTATCTCAGATGAAGTGCTGAGTCAATTAACAAGGAAAACTAAAAAAAAGATGGAAAAAGAATTGAAGAAGCAAAGAGATGGTCGTGAGAGTGATAGTGAAATGGAACCTGACTTTAAAAGATCTGACAATTTCAGGCATGATATTAATAGAATGGATAGCGATGGCAATGAAGAGAAAGTAAGCTCTTTTATAAATCAGGGAAATAATTCAATGAAAAATAAGATGATTGAAAATGTTGGTGGTGTTAGCTTTAAATCCCAAAAATCAACCCATTGCGTACAAGATGGAACTGAAAATTCTTTGTCTGGATGTGATCCTCATCATCCACATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTGATCCGTAGTTCCAATAAGGGAGTGAATTCAGAATCTGGTGGCTTTGTTCCATATACAGGCAAAAGAACGGTACTTTCCTGGTTAATTGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTATTGCAAACGAAAACGAGTAATGCTGGAGGGATGGATTACAAGAGATGGCATTCACTGTGGATGTTGCAGTAAAATCCTCACGGTTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAACATATATTTGGATTCAGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGCGGAGACAGGAGAGTTCAGAGGAAATTAATTTTCATTCTGTTGATGTTGATGTTGATGGCAATGATCCAAATGATGACACCTGCGGTATATGTGGAGATGGAGGTGATTTAATCTGTTGTGATGGTTGTCCATCAACATATCATCTGAGCTGCTTGAATATACCGATGCTTCCTCCTGGTGAGTGGCATTGTCCAAAGTGCACTTGCAAGTTTTGTGGAATAGTCAGTGGGAAAATAGAAGATGATGCTTCTGTACATGATCTTGTCACTTGCAACTTGTGTGAGAATAAATATCACGAATGTTGCACTAAGGAGATGGATGCTATTTCTATCAACTCAGAATTTTCTGGCCTTTGCTTTTGCGGAAAGGAGTGCAAAGAGCTTTTTGAGCACCTGAAGAAGTACCTAGGTGCCAAGCATGAGCTAGAAGCAGGCTTTTCATGGTCCCTTATTCATAGAACAGATGATGACTCAGAGGCAGCTGATAGAGGAATTCTCCAATGGGTAGAATGCAACTCTAAGTTAGCCGTTGCACTGACTGTGATGGATGAATGCTTTTTACCTATTGTTGACCAGAGGAGTGGCATCAATTTAATTCATAATGTTTTACATAATAGTGGATCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTACACAGCTATTCTGGAGAGAGGCGATGAAATAATTTCCGCAGCATCTATCAGGTTCCATGGGACTAAGCTGATGGAGATGCCATTTATTGGAACTCGTCATATATACAGGCGCCAGGGGATGTGCCGGCGGCTTTTTTCTGCCATTGAGTCGGCCCTCTGCTCTCTTAAGGTTGAGAAAATGGTTATTCCAGCAATTGCTGAACTCACACAAACATGGACAGAAATATTTGGCTTCACACCTCTTGAAGAATCACTCAGGCAAGACATGAGGTCATTGAATATGCTGGTCTTCCCTGGTATAGATATGCTGCAGAAGTCGCTGGTGAAGCAGGGAAACTTTGAAGGGAACACATCTTCTACAGGTGCTGATAAAATAGACCATGGAGACCAAGTTAATACTAAACCAAAATTGGCTAATTCCTCATCTCATGTGGATCCTGATGGAAGCGACGATTCTGGTTTAGATCCTCTTGGTGAGACAAAAGATGAATGCAGTGATGCATCTTTAGATCAAACAAATCAAGTTTTGTCTGACAAGATTGTGTGTTCCAAATCCTGTTCTGAGGATAGGCTATCAGACTTAGCTTCAGATAGATGTTCTTCTCCCTCTAGTACCAGTCATGATGTGCTTGAGATGGAAAATAAAGCGGTTTCTTCTCCGTCAATGAAAGATAATTTGTGTTTGTCTACCAACTGTTGGGGCAATTCTTTGAATGACACTTCTATTGATATACATCAATCAGATGCTCCAGATGGCCCTGAAAATTGTAATTTGGTTCAGAGGGCAGCTAATTCTGGTCCCAATTCAGCAAAAAATCTGGCTGAACCTGTTTCTGATTGGGAAGGTCATTTGCCTGTTGCTATAAATGGTGATACATCTGAGTTCGAGATGAACCTGATGTTGGATTCTCAAATGATGGATAATGCTACCTCTTTTAGGGAGGTTGACATGAATAATTTTCATGAGGAACATGAAGCTGTTCCTTTGGGGACTTTGTTCAAAAGTGGTGTCACCATCGATAACATTGAACGTACACACGTGTCTGATTCTGAAGTCAACCATGAAGACAAGAATGAAACTGAGTGTGAAAGGGAAAGAAATTTATATGTAGATCCTGAAATTACTTCAAAAGAAATGCAATTTTATGGAAGTGACATTATTGCTTCTAGTGATAGTTCTGAGACTGATTCGGAGTAA	3915	0.4092	MEPGMRSTGPSGVVVKSRNSSGCLIVRKKGDDGFGGGGYRSSSSSRKLYESNVRQRHSMAMSDSESSDDLLMPQSRRRLGPGTFRACNGLTASERGIVEGGEIGRKKDRMMHIRRSEGAMIEENGLEQRKRKKTKMEVFDYDERDGIGVDKMKRRLFYDNDGAGFGGRRFMGPMHATRTGFESQFETGSSRHTLDDRNNSYYGGHNGLYLEDTVDPSRFHVNRDDARLRQPLLKDKFKSNETIRVQGKNGVLKVMVNRNRVGGPSEYYNNHKPIENRQNLLTEAPVKRNIPAHSSSYLDNKIVERSGFVVRPKKKWIASRKSLSMKDRASEDSDTPLNQGPGNMKPFKSVKRVDSEDEKTPLCEKLPTTEIKEGKEGKVRRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYEALQKQLNGDDYEAKPLGDSSSFALISDEVLSQLTRKTKKKMEKELKKQRDGRESDSEMEPDFKRSDNFRHDINRMDSDGNEEKVSSFINQGNNSMKNKMIENVGGVSFKSQKSTHCVQDGTENSLSGCDPHHPHGRKSRKHGRCTLLIRSSNKGVNSESGGFVPYTGKRTVLSWLIDSGTVQLSQKVQYCKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWRRQESSEEINFHSVDVDVDGNDPNDDTCGICGDGGDLICCDGCPSTYHLSCLNIPMLPPGEWHCPKCTCKFCGIVSGKIEDDASVHDLVTCNLCENKYHECCTKEMDAISINSEFSGLCFCGKECKELFEHLKKYLGAKHELEAGFSWSLIHRTDDDSEAADRGILQWVECNSKLAVALTVMDECFLPIVDQRSGINLIHNVLHNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLMEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKMVIPAIAELTQTWTEIFGFTPLEESLRQDMRSLNMLVFPGIDMLQKSLVKQGNFEGNTSSTGADKIDHGDQVNTKPKLANSSSHVDPDGSDDSGLDPLGETKDECSDASLDQTNQVLSDKIVCSKSCSEDRLSDLASDRCSSPSSTSHDVLEMENKAVSSPSMKDNLCLSTNCWGNSLNDTSIDIHQSDAPDGPENCNLVQRAANSGPNSAKNLAEPVSDWEGHLPVAINGDTSEFEMNLMLDSQMMDNATSFREVDMNNFHEEHEAVPLGTLFKSGVTIDNIERTHVSDSEVNHEDKNETECERERNLYVDPEITSKEMQFYGSDIIASSDSSETDSE	1304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	320	360	-	-
	Mibi13g1409	1304	Pfam	Tify domain binding domain	635	685	IPR032308	-
	Mibi13g1409	1304	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	704	793	IPR013083	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	1	82	-	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	473	521	-	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	1039	1053	-	-
	Mibi13g1409	1304	ProSitePatterns	Zinc finger PHD-type signature.	715	754	IPR019786	-
	Mibi13g1409	1304	SUPERFAMILY	FYVE/PHD zinc finger	695	757	IPR011011	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	38	69	-	-
	Mibi13g1409	1304	CDD	PHD2_CHD_II	715	754	-	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	1020	1071	-	-
	Mibi13g1409	1304	PANTHER	PHD FINGER PROTEIN 12	372	1147	IPR042163	GO:0003714\|GO:0045892
	Mibi13g1409	1304	Pfam	PHD-finger	715	757	IPR019787	-
	Mibi13g1409	1304	SMART	PHD_3	714	755	IPR001965	-
	Mibi13g1409	1304	SMART	PHD_3	756	812	IPR001965	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	1054	1071	-	-
	Mibi13g1409	1304	ProSiteProfiles	Zinc finger PHD-type profile.	712	757	IPR019787	-
	Mibi13g1409	1304	MobiDBLite	consensus disorder prediction	473	517	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g1409	Mibi-ChrMibi13	20909766	20917050	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g1409	1	1034	PHD Transcription Factor Family	AT4G14920	48.534	0.0	877

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mibi13g1409		TDBD	1.1e-21	No_clan