Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1407 ATGGAACCGGGGATGAGATCAGCTGGAAATTCTGGGGTTTTAGTGAATAGAAGAAACTCTTCAGGTTGTTTAATTGTTAGAAAGAAAGGGGATGGGTTGAATGGTAGATTTGGTTCTCCTAGCAGCTCACGCAAGCTGAATAAATCAAAGGTTAGGAAAAGGCACTGTGTGGTTGAGAGTGATTCCGAATCAAGTGATGAGTTGCCCATGCCTCCAATGAGGAGGCTTGGTTCTGAGACTATTCGTGTTTGTAATGGGTTGACTGCTTTTGAGCGAGGTGTAGAAGAAAGGAGTGAAACTGGTAGAAAGAGGGATAGAGTGGAGCAGATCAGACGTAATGGGGATTCTGTGTTTGACAAGAATGGTATGGAGCAGAGTGAAACTAAGAGGAATAAACTGGATGTGTTTGAGTTTGATGAATATGATGGTTTTGATGAGCAAATGACTCCCAGGAGGAAGTCTGATGATGGTAATGGAGTTAGTTTTGGAGGAAGAAGGTTTCTGAAACCAATGCATGCTGCTGCTTCTAGTGGCATTAAGAGGGAATTGGAAACAGGGACAAGTAGACCCATTGTTTATAGTAGAAAGAATTCTTATTATGATAGGGCTAGTGGTTTGGATCGAGGAGATAATATTAATCAAAGCAGGTTAAAATCAGATAGGGGTGATGCTCAGCTACCTCTTTCTTTGGTGAAAAATAAGTTTAAATCAGATGAATCCATCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTGATGATTAATAATAATAAGAAGGCTGGCCTATTAGAGAACTATGGTCATCACAAGCCTATGGAAAGAAGACATAGTTTGAGGACTGAGGCCATTGCCAAGAAGAACACCCTGGTCCATGATTCATCGTACGCAGAAACAAAACATGTTCAGAAGCCAGGTTCACTTGTTAGACAAGAGAAAAAACGGATAGCATCGAAAAAATCATTTTCATCTAAGGACAATAAGGGTCGTGTTTGGGATACAGAGGACAGTGATTCATCATCGAATCATGAGTTAGAAACTACTAAAACTCGCAAGTCTTTGAAGAGGGCAGGTTCTGAGGATGAACAGACTCCTTTGCGTGAGAAACTCCCACCTACAACGATGAAAGAAGGGAAGGTGAGGCGGGGTAGTGGCACTGAAAAACAGAAGCTGCGAGAAAAACTAAGGGAGATGTTACTGAGTGCAGGATGGACTATAGATTATCGGCCTCGAAGGAATAGAGATTATATGGATGCAGTTTATATTAATCCTGGGGGTACAGCCTATTGGTCTATCATCAAAGCCTATGATGCTCTGCAAAAGCAATTGAATGATGATGATAATGACATCAAGCCCATGGGTGATGGTTCTTCCTTTGCTCCCATCTCAGATGAGGTGTTGAGTCAATTAACAAGGAAAACTCAGAAAAAGATGGAGAGAGAATTGAAGAAGAAGAAAATTTATGGTAGTGAGAGTGAGAGTGGTAGTGAAGAAGAACCCATCCGTAAAAGATATGCCAGACGCAAGCATGATGTGAATAGCATGGATAGTGATAGTGATGAAGAGAAATTGAGTTCTTTTATGAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGCCAGAAAATGTTGTTGCCAGTGCTAGCTTAAAATCCCAGAAATCTACCCGTCGCATACGTGATGAAACTGAGAATTCATTCTCAGAAGGTGATCCATATCAGTCACATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTAGTTAGGAGTTCTAGCAAGGGATTGAATTCAGAACCTGGTGGTTTTGTTCCATATACTGGCAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTGGGATTGAGCCAAAAGGTTCAGTATCGGAGACGAAAACGGGTAATGCTGGAGGGATGGATTGCAAGTGATGGCATTCATTGCGGCTGCTGCAGTAAAATCCTCACAATTTCCAAGTTTGAGATTCATGCAGGTAGCAAACTGCGACAGCCATTTCAAAACATATATTTGGAATCTGGAATTTCTCTTCTACAGTGTCAAATAGATGCATGGAATAGACAAGAGAATGCTGAGAAAATTAGTTACCATTTGGTGGATATTGATGGTGATGATCCAAATGATGACACGTGCGGCATATGTGGAGATGGCGGGGCCTTAATCTGTTGTGATGGTTGTCCGTCAACATTTCACCAGAATTGCTTGGGTTTTAAGATGCTTCCTCCTGGTGATTGGCATTGTCCAAATTGCACCTGCAAATTTTGTGGAATAGCCAGTGGGACTGTTGAAAAAGGAAGTGTTGCTGCAAATGCTCTACTTACTTGCAACTTATGTGACAAAAAATACCATGAGTCTTGTGCTGAGAAGATAGATGCCCTCTCTATTAACCCCAACATATTGGGCTTTTCTTTTTGTGGAAAAGAGTGTAAACAGCTTTTTGACCATTTGAAGAAGTACCTAGGTACTAAGCATGAGCTAGAGGCAGGATTTTCATGGTCTCTTACTCATAGAACAGACGATGACTCAGAGGCAGCTAGTAAGGGAATTTTTCAAAGGGTGGAGTGCAACTCCAAGCTAGCTGTTGCACTGACTATCATGGATGAATGCTTTTTACCAGTTGTTGACCGGAGGAGTGGGATCAATTTAATTCATAATGTTTTATATAATAGTGGGTCAAACTTTAGTAGGCTGAATTATAATGGTTTTTACACTGCTATTTTGGAGAGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACAAGGCTAGTGGAGATGCCATTTATTGGAACTCGCCATATATATAGACGTCAGGGCATGTGCCGCCGGCTTTTTTCTGCTATGGAAACGGCCCTCCGCTCTATGAAGGTTGAGATAATGATTATCCCAGCAATTTCCGAACTCATGCAAACATGGACAACGAATTTTGGTTTCACACATCTTGAGAAATCACTGAAGCAAGAACTGAGGTCTTTGAATATTCTAGTGTTCCCTGGTATAAGTTTGCTACAGAAGGTGTTAGTAGAGAAAGAGAAAGGTAAGTTTGAGGGGAACACAACTGCCCCAGGTGTTGAGAAAATGGAAAATGGAGACGAAGTTAGTGTCAAACCAAAATTGGCTGATAGGTCAGATGATTCCTCAGATCAACAAGACCCTGATGGAAGTGATAATGCTGATTCAAATCCTGCCAATGAGATAAATGGTGAATGTATCAATGCTTGTCAAGAGATGAAAGATCAGGTTTTATCTGACAGGACTGTGTGCTCCAAACCTCATTCTGAGGATAAGCTATCTGATTCGGCCTCAGATAAATGTTCTTCTCCCTCCGGTACAACCCATGTTGCTCTGGAGATGGAAAATCCTGTGAAAGATGATTTGAATACATCTGGCAAAAGTCAGGTCAATGATACTTCTAATGATATACATCAGGCAGATGCTCAGGATTGCCCTGAAAATTGTACTTTGGTTCCGGAAACTGCTCCCTCTGAACCTAATTTGACAGAAGACCTTGTCAAGCCTTTTTTTGAACAGAAAAGTAATTTGCCCACTGCTGTAAATGGTGATTCTTCTGAGAACGAGACGAATCATGTGGTGGATAACATGATGTCATCCGGAGAGGTTGGCATGAATAATACTCATGAGGTTCATAAGAATGTTCCTTCAGGTGGGTTATCTGAAGAAAATATTGCCGCACAGAGCCATGAAAATGCAGATATGACTGATCCTATACTCAATCATGCTGATGTGAGTTCCTTGCAAATCAATTCAGGTTTGAATAGTAAAACTGTGTGCCAAGAAAGAAATATAAACGTAGGCGAAGAATTTGCTTCTAAAAATACGACTTCTGATGAAAATGGCATCAATGTAACCAATGATAGTTCTGAGACTGGTCAAGAGTAA 3927 0.41 MEPGMRSAGNSGVLVNRRNSSGCLIVRKKGDGLNGRFGSPSSSRKLNKSKVRKRHCVVESDSESSDELPMPPMRRLGSETIRVCNGLTAFERGVEERSETGRKRDRVEQIRRNGDSVFDKNGMEQSETKRNKLDVFEFDEYDGFDEQMTPRRKSDDGNGVSFGGRRFLKPMHAAASSGIKRELETGTSRPIVYSRKNSYYDRASGLDRGDNINQSRLKSDRGDAQLPLSLVKNKFKSDESIRVQGKNGVLKVMINNNKKAGLLENYGHHKPMERRHSLRTEAIAKKNTLVHDSSYAETKHVQKPGSLVRQEKKRIASKKSFSSKDNKGRVWDTEDSDSSSNHELETTKTRKSLKRAGSEDEQTPLREKLPPTTMKEGKVRRGSGTEKQKLREKLREMLLSAGWTIDYRPRRNRDYMDAVYINPGGTAYWSIIKAYDALQKQLNDDDNDIKPMGDGSSFAPISDEVLSQLTRKTQKKMERELKKKKIYGSESESGSEEEPIRKRYARRKHDVNSMDSDSDEEKLSSFMKQGSKSMKNKMPENVVASASLKSQKSTRRIRDETENSFSEGDPYQSHGRKSRKHGRCTLLVRSSSKGLNSEPGGFVPYTGKRTVLSWLIDSGTVGLSQKVQYRRRKRVMLEGWIASDGIHCGCCSKILTISKFEIHAGSKLRQPFQNIYLESGISLLQCQIDAWNRQENAEKISYHLVDIDGDDPNDDTCGICGDGGALICCDGCPSTFHQNCLGFKMLPPGDWHCPNCTCKFCGIASGTVEKGSVAANALLTCNLCDKKYHESCAEKIDALSINPNILGFSFCGKECKQLFDHLKKYLGTKHELEAGFSWSLTHRTDDDSEAASKGIFQRVECNSKLAVALTIMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYNGFYTAILERGDEIISAASIRFHGTRLVEMPFIGTRHIYRRQGMCRRLFSAMETALRSMKVEIMIIPAISELMQTWTTNFGFTHLEKSLKQELRSLNILVFPGISLLQKVLVEKEKGKFEGNTTAPGVEKMENGDEVSVKPKLADRSDDSSDQQDPDGSDNADSNPANEINGECINACQEMKDQVLSDRTVCSKPHSEDKLSDSASDKCSSPSGTTHVALEMENPVKDDLNTSGKSQVNDTSNDIHQADAQDCPENCTLVPETAPSEPNLTEDLVKPFFEQKSNLPTAVNGDSSENETNHVVDNMMSSGEVGMNNTHEVHKNVPSGGLSEENIAAQSHENADMTDPILNHADVSSLQINSGLNSKTVCQERNINVGEEFASKNTTSDENGINVTNDSSETGQE 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1407 1308 CDD PHD2_CHD_II 717 756 - -
Mibi13g1407 1308 SMART PHD_3 758 816 IPR001965 -
Mibi13g1407 1308 SMART PHD_3 716 757 IPR001965 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 527 551 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1025 1075 - -
Mibi13g1407 1308 Pfam Tify domain binding domain 639 689 IPR032308 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1211 1233 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1094 1110 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 27 52 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1094 1154 - -
Mibi13g1407 1308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 773 IPR013083 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1134 1154 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 479 583 - -
Mibi13g1407 1308 PANTHER PHD FINGER PROTEIN 12 348 1135 IPR042163 GO:0003714|GO:0045892
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 291 388 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 479 526 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1038 1058 - -
Mibi13g1407 1308 Pfam PHD-finger 717 759 IPR019787 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1283 1308 - -
Mibi13g1407 1308 ProSiteProfiles Zinc finger PHD-type profile. 714 759 IPR019787 -
Mibi13g1407 1308 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 903 992 IPR016181 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 1211 1227 - -
Mibi13g1407 1308 SUPERFAMILY FYVE/PHD zinc finger 705 762 IPR011011 -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 146 165 - -
Mibi13g1407 1308 MobiDBLite consensus disorder prediction 95 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1407 Mibi-ChrMibi13 20896782 20904363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1407 4 1017 PHD Transcription Factor Family AT4G14920 49.708 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi13g1407 TDBD 1.1e-20 No_clan