Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1386 ATGGAAATTCAGAGACGCCAAGATCAGGGCTTCTCTGAGCGCAAAGGACAGAAGAGGAAGCTGGAGGAGGAGGAAGAAGATGATTTCGAAGAAGACGACTCTGAGATCTCCCCTCCTCCTCCTCCTACCGGCCATGTCCGTGACGCCTTGCTCGCCGAGGTCATCTCTCAGGTCCACCTCCTTCACTCCTCTTTCTCTTGGTCCGATTCCGATCGATCCTCCTCTAAGCGCGCCGCTCACGTCCTCGCCGAGCTCGCTAAGAATGAAGAAGTAGTGAACGTGATTGTTGAAGGAGGTGCAATTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTGAATGAAGACGATCCTGGTGTGAAACCATTTGAGCACGAGGTTGAGAAAGGAAGTGCGTTTGCTCTTGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAATGGTGCCTTGAAACATCTTGTTGATCTATTGAGGAGGCATAACAATAGCTCCGCTTCTCGTGCTGTGAATAGTGTCATTCGTAGGGCTGCAGATGCGATCACTAATCTTGCGCATGAAAACAGTAACATCAAAACCTTGGTCAGGATGGAAGGTGGGATTCCACCACTTGTTGAGTTGCTTAAATTCACGGATACAAAGGTTCAAAGAGCAGCTGCTGGTGCACTGCGCACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATCGTCGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTCCGTTCTGAAGATCCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTGCACTCTTCTCCTAATATAAAGAAAGAAGTTATTCTAGCTGGAGCTTTGCAGCCTGTAATTGGATTGCTTCGATCTTGCTGCTCTGAGAGCCAAAGGGAAGCAGCATTGTTGCTTGGACAGTTTGCAGCTACTGATTCTGACTGCAAGGTGCATATTGTTCAGAGAGGTGCTGTTCAACCTTTGATAGAGATGCTTCAATCCAATGATTTACAACTAAAAGAAATGTCTGCCTTTGCCTTGGGGCGACTGGCACAGGACGTGCATAATCAAGCTGGTATTGCATACAATGGTGGCTTAGCGCCATTACTTAAGCTTCTTGATTCAAAAAATGGATCTTTACAACATAATGCAGCTTTTGCACTATATGGCCTTGCAGATAATGAGGATAATGTATCCGATTTTATTAGGGTAGGTGGTGTTCAGAGACTGCAGGATGGGGAGTTTATTGTTCAGGCGACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGCCGTGTTCTGGATCATTTGTTATATATTATGAGAGTTTCGGAAAAGGCTGTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGTGGATGATCAGAGATCAATATTCATTGATAACAATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCTAGCACAAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTGGCCAAGAAATCCATGAATCTCTCTCCCATAGATGCTGCTCCCCCGTCTCCAACACCTCAGGTCTATTTGGGAGAGCAGTATGTTAATAGTCCTACATTGTCTGATGTTACATTTTTGGTTGAAGGGAAGCGGTTCTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCGAGGGATATTGAAATTCCAAATATAAGATGGGAGGTTTTTGAATTAATGATGAGATTCATCTATACTGGATCAGTTGATGTTACTCTGGACATTGCTCAAGATCTCCTTCGGGCAGCTGATCAATATCTCTTAGAAGGACTTAAGAGACTTTGTGAGTACACGATTGCGCAGGATATATCACTTGAGACTGTGTCAAGTATGTATGAACTTTCGGAAGCCTTTAATGCAATATCATTGAGGCACACCTGCATCGTTTATATCCTAGAGCAGTATGATAAATTGTGTTCCAAGCCAGGGCACTCTCATATGATTCAACGCATCATGCCAGAAATACGCAGTTACTTTACAAAAGCACTTATGAAGGCTAACTACCCTACTGCTCGGTCGTAG 2139 0.4418 MEIQRRQDQGFSERKGQKRKLEEEEEDDFEEDDSEISPPPPPTGHVRDALLAEVISQVHLLHSSFSWSDSDRSSSKRAAHVLAELAKNEEVVNVIVEGGAIPALVKHLQPPPLNEDDPGVKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLRRHNNSSASRAVNSVIRRAADAITNLAHENSNIKTLVRMEGGIPPLVELLKFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDPAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLRSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSNDLQLKEMSAFALGRLAQDVHNQAGIAYNGGLAPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLDHLLYIMRVSEKAVQRRVALALAHLCSVDDQRSIFIDNNGLELLIGLLGSSSTKQQLDGAVALCKLAKKSMNLSPIDAAPPSPTPQVYLGEQYVNSPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLETVSSMYELSEAFNAISLRHTCIVYILEQYDKLCSKPGHSHMIQRIMPEIRSYFTKALMKANYPTARS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1386 712 Gene3D Potassium Channel Kv1.1; Chain A 525 671 IPR011333 -
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 153 IPR000225 GO:0005515
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 237 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 141 189 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 317 357 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 358 398 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 233 273 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 191 231 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 472 513 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 275 315 IPR000225 GO:0005515
Mibi13g1386 712 SMART arm_5 88 140 IPR000225 GO:0005515
Mibi13g1386 712 MobiDBLite consensus disorder prediction 1 23 - -
Mibi13g1386 712 Gene3D - 421 524 IPR011989 -
Mibi13g1386 712 SMART BTB_4 545 642 IPR000210 GO:0005515
Mibi13g1386 712 Gene3D - 49 418 IPR011989 -
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Mibi13g1386 712 Pfam Armadillo/beta-catenin-like repeat 233 272 IPR000225 GO:0005515
Mibi13g1386 712 Pfam Armadillo/beta-catenin-like repeat 317 356 IPR000225 GO:0005515
Mibi13g1386 712 Pfam Armadillo/beta-catenin-like repeat 194 230 IPR000225 GO:0005515
Mibi13g1386 712 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 706 IPR044282 -
Mibi13g1386 712 MobiDBLite consensus disorder prediction 1 46 - -
Mibi13g1386 712 CDD BTB_POZ_ARIA_plant 532 647 - -
Mibi13g1386 712 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Mibi13g1386 712 SUPERFAMILY ARM repeat 443 620 IPR016024 -
Mibi13g1386 712 SUPERFAMILY ARM repeat 63 416 IPR016024 -
Mibi13g1386 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 202 IPR000225 GO:0005515
Mibi13g1386 712 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
Mibi13g1386 712 SUPERFAMILY POZ domain 536 639 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1386 Mibi-ChrMibi13 20503726 20511566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1386 242 513 U-box Gene Family AT3G46510 24.911 7.99e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi13g1386 BTB 6.1e-26 CL0033