Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1374 ATGGCTTCAACGAGCAGAGCATCAAAATCATTCCCCGAACTTCATTCTTCAAGCGCAAGCAACCTCAGAACCTATCATAGCACACCATTAATCACCAAACCTTTTGATCGTTACTCGCATTCCACAAAAGGGATTACTACTTGCCTATCAGAAATCCAAAGGAGTAGCTATATTCAACCTTTTGGTTTCCCGATTGTCATCGATCAGCCCACTTTTCGCGTTATGGGGTATAGCGAAAACACACCGGATTTTCTTGGTCTTGATGCCCCAGGATCAGATCCAAGTCTAGAGAACTCTGAAACTCTCGAAATTGGGTTAAAAATTAAGAATTTCTTCACCCCATATAGTGTGCTTCAAATTGAAAAGGCATTGGAAGCTCCACGACTTTCACAGTTGAATCCCATTTGGGTTTGCTCTAAGAATTCAGGGAAGCATTTCTATGCGATTCTGCATGGGATTGATGTTGGAGTTGTAATTGTTTTCGAGCCTGCCAGAATAGAGGATCCAGAGTTATCCATTTCTAGATCAATAGAACTTACTGGCTATGATAGGGTAATGGTTTATAAATTTCATGAAGATGCGAATAGTGTGGTTGTTATTGCTAAGAGCAAGAGACCGGACATGGAGGCTTATATTGATGATTTGCCTTATCTTGCTTTTGATATTCCTCAGGATTTGAAGTTATTGTTGAAGCAGAATCGAATTAGTTATCCTGGAGCTGCCTCCCTTGCTGATTCTTCTTTAGTTTGTGGAATGACTGTTGCTTATATCACAGCAAAAGATTTTGTGTTCTGGTTCAAATCCGGTGCGGTGGAAGAGATAAAATGGGACGCAAAGAAATTCCAAGTCCACGATCTTACTTGGGTGGAAAAAGAAATGGTTAGATTGGTAGAAACTGCTGTTGCTCCTGTATGTACTGTTGATGTCAATGGACGAATAAGAGGATGGAATGCCAGAGTTGCAGAATTGACTGGGCTCTCAGTTCAGGAAGCTGTTGGAAAATCATTGGCTCATGATCTTGTGCATAAGGAGTCTGAAGACACTGATGTTACTGAAAAGAAACTTGTAATGGACAAGTGTATTCACTTACAAGGTGACTACGAGGCCATTGTACATAACCCAAGTCCATTGGTCCCTCCCATTTTTTCCTCAGATTCTAACACATGTTGTTCAGAGTGGAACAATGCCATGGAAAAGGTCACTGGTTGGCTTTGTGGCGATGTCATTGGGAAAATGTTGGTAGAAGAGATTTTTGATGGTCAGATTATTGGGGTTCTCTGCTTCTTGCAAACTGCAAGTTCTGAACTTCAACAGGCTCTGGATGTTCAGAGGAAAATGGAGAAGAATTGCCTTGGTACAGAATTGACTGACGATCAGAATCAGTTTCTAGCGGCTAGTGACTCTTGTGAGAAGCAGATGTTCAGGATAATACATGATGTGGACCTGGAGAGCATTGAGCAAAGGTGA 1467 0.4151 MASTSRASKSFPELHSSSASNLRTYHSTPLITKPFDRYSHSTKGITTCLSEIQRSSYIQPFGFPIVIDQPTFRVMGYSENTPDFLGLDAPGSDPSLENSETLEIGLKIKNFFTPYSVLQIEKALEAPRLSQLNPIWVCSKNSGKHFYAILHGIDVGVVIVFEPARIEDPELSISRSIELTGYDRVMVYKFHEDANSVVVIAKSKRPDMEAYIDDLPYLAFDIPQDLKLLLKQNRISYPGAASLADSSLVCGMTVAYITAKDFVFWFKSGAVEEIKWDAKKFQVHDLTWVEKEMVRLVETAVAPVCTVDVNGRIRGWNARVAELTGLSVQEAVGKSLAHDLVHKESEDTDVTEKKLVMDKCIHLQGDYEAIVHNPSPLVPPIFSSDSNTCCSEWNNAMEKVTGWLCGDVIGKMLVEEIFDGQIIGVLCFLQTASSELQQALDVQRKMEKNCLGTELTDDQNQFLAASDSCEKQMFRIIHDVDLESIEQR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1374 488 Pfam PAS fold 49 164 IPR013654 GO:0006355
Mibi13g1374 488 SUPERFAMILY GAF domain-like 236 276 - -
Mibi13g1374 488 Gene3D PAS domain 52 177 - -
Mibi13g1374 488 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 178 235 IPR016132 -
Mibi13g1374 488 SUPERFAMILY PYP-like sensor domain (PAS domain) 290 346 IPR035965 -
Mibi13g1374 488 CDD PAS 303 390 IPR000014 -
Mibi13g1374 488 ProSiteProfiles PAS repeat profile. 289 347 IPR000014 -
Mibi13g1374 488 SUPERFAMILY GAF domain-like 177 238 - -
Mibi13g1374 488 SUPERFAMILY PYP-like sensor domain (PAS domain) 349 423 IPR035965 -
Mibi13g1374 488 Gene3D PAS domain 288 361 - -
Mibi13g1374 488 Coils Coil 429 449 - -
Mibi13g1374 488 TIGRFAM sensory_box: PAS domain S-box protein 295 348 IPR000014 -
Mibi13g1374 488 ProSiteProfiles PAS repeat profile. 366 418 IPR000014 -
Mibi13g1374 488 CDD PAS 377 432 IPR000014 -
Mibi13g1374 488 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 165 IPR035965 -
Mibi13g1374 488 Pfam PAS fold 366 420 IPR013767 GO:0006355
Mibi13g1374 488 Pfam PAS fold 292 346 IPR013767 GO:0006355
Mibi13g1374 488 Gene3D - 178 235 IPR029016 -
Mibi13g1374 488 SMART pas_2 365 434 IPR000014 -
Mibi13g1374 488 SMART pas_2 291 358 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1374 Mibi-ChrMibi13 20357851 20361043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1374 269 486 Histidine Kinase Gene Family AT2G18790 34.078 4.56e-50 182