Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi13g1360 | ATGTTGGGAATACTTCGCTATTTCGTCCTCCTCGAGAATCCTCACATTTCGTCGCCCTCAAATTCACTCAGAAGTCAGAACCCAGAAATTCCCAGTTACACTCACTTCTCTCTGCTCCTATTTCCCCGCAAAAAAAAAAAAAAAATTAGGGTTAGGGATTTCTCTCTGTTCGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACAACAATTATGATTCTCACCCATATCGTCAGTCCAGAGCTCCGTCTCGCTTCTCCGATGGTCCTCCTTTGAACAATCGCGGCGGCGGTGGGGGAGGAGCCTTTCACCACCGTCAATTTGATAGCCCACCCCGTCGTTCTCCGGCGAGAGGTCAAGGGTTTCGATCACCGGGTTTTGCCGCCGGCGGTGGCGATGGGTTTAGGCCTATGAGTGATGAGGGAGGGTTTGGGTTTAACGGCCGTCCAGGTCAGCAATTGTCTGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGTTCGCCGGACCGTTTCGGTGGGGAAAGTTTTGCCAAACTTTTTGTTGGAAATGTTCCACGGACAGCAACTGAAGAAGATATTCGGCCTTCGTTTGAGCAACATGGGAATGTGGTTGAGGTTGCTTTGATCAAGGATAGAAAGACAGGACAGCAGCAAGGTTGTTGTTTCATAAAGTACGCTTCCCCTGATGAAGCTGATCAGGCAATTAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTGTTGGTCCAATTCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTTGAATACAAATTATTCGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAAGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTCTATCTTATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCATAGAGATATGGCCCTGGCTGCTATAAATGCACTGAATGGAATTTTTACAATGAGAGGTTGTGATCAACCTTTAACTGTACGATTTGCTGATCCTAAGAGACCTCGTCAAGGGGATTCCAGGGGTCCTGCATTTAGTTCAAGATTTGAAGTGCCAGGTCCTAGACATCCAGGATCTGGTCCAAGATTTGAAGCACCAAGTTCTAGGCCTCCATTCATTGGTAATGATCCCATGGGTGAACAAGCCTCTGCTCCCAATGCTTGGCGTCCAATGCATCCTTCAAATATGGGGCCGTCATCTAATGCTGGTCTACATAACCTGAGGCCTCCATTGCTTTCAAGATCTGGGGACATGGACATGACATGGGCAATGAATGCAGGTGGTCCTGGGAATGGCTTTGGAGGCCCTCCAAACGGTCCTTTTCAAAGACAGACTCTGTCACCAATGTCACAACAGAATTTCAATCGAAACTTTCTGCATATTCCACCGGCCAGCCAACCAATGTCGCCACTGCAGAAGCCTATTCATTCACCTCAGGACAAGCCTTCTCCCCTCCAGCTGTACCCTCCAGCACCCACCCCTTACTCTCATACACCAGCTTCTCTTGCATCATTTAGGCAGGCTGGCCAACCGCAAGTTCCGTTATCTGCTGGTCCATTTCCTTCACAACAGGTCCATGGTGTAAATGGACACTTTCCAGTTTCTCAGCCCCAAGCTCAGCAGGTTGCTTCATCTGCTGCAGCTGCCCAGGGCCATGCCCCTCTAGATACCAGCTTGAGATTAAACACAACATTGACCGCCACAAATCAACAGCAACTATCTACATCTTTGCAGCAGCAGCAGCCACTTCAGCATCAGCAGTCTCCATCCCAGTTGGCACAAATGTTGTCACAACAAACTCAGACTTTGCAGGCAAGCTTCCATTCATCTCAAAAGGCCTTCTCCCAGCTTCAACAACAGCTACAGATGATGCAACCATCTAGTCAAGGTTTACCAGTGCAGCAAAATGCAGAATCTATGAAAAAGCAGTCTCAGTGGACAGGGGCTGCACCAACTGCAGATGTGCCTTCATCCTTATCTGCTGCTGCTGTACCTCCAATAGGCCAGAACATAGTTCCTGCAAAATGTGATTGGACAGAGCATATATCTCCTGAGGGCTTTAAGTACTACTACAATAGTGTTACTGGCGAAAGTCGGTGGGAGAAACCGGAAGAGTTGACTTTATCAGAACAGCAAAAGCCATCTGTTCAGCAATCTCAAAGTCAGTCACAGCCTTCAATATCACCTCAACAAGTTCCTCAAATGCAACAATTGCGGCCTCAAGGCCAACTCCAAGGGCAGGTTCTCCAGCAACAGTTCCAGGCTTATGCAGGTGCAGGTCATCAAAATGCTCAGGGAATGTATACTATGCAAGAGTGGATGTGGAAAGATAAGCCTGCAGGGGTTTGA | 2406 | 0.4792 | MLGILRYFVLLENPHISSPSNSLRSQNPEIPSYTHFSLLLFPRKKKKKIRVRDFSLFAKLDRHRGDRYGNNNYDSHPYRQSRAPSRFSDGPPLNNRGGGGGGAFHHRQFDSPPRRSPARGQGFRSPGFAAGGGDGFRPMSDEGGFGFNGRPGQQLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGNVPRTATEEDIRPSFEQHGNVVEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLTVRFADPKRPRQGDSRGPAFSSRFEVPGPRHPGSGPRFEAPSSRPPFIGNDPMGEQASAPNAWRPMHPSNMGPSSNAGLHNLRPPLLSRSGDMDMTWAMNAGGPGNGFGGPPNGPFQRQTLSPMSQQNFNRNFLHIPPASQPMSPLQKPIHSPQDKPSPLQLYPPAPTPYSHTPASLASFRQAGQPQVPLSAGPFPSQQVHGVNGHFPVSQPQAQQVASSAAAAQGHAPLDTSLRLNTTLTATNQQQLSTSLQQQQPLQHQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLPVQQNAESMKKQSQWTGAAPTADVPSSLSAAAVPPIGQNIVPAKCDWTEHISPEGFKYYYNSVTGESRWEKPEELTLSEQQKPSVQQSQSQSQPSISPQQVPQMQQLRPQGQLQGQVLQQQFQAYAGAGHQNAQGMYTMQEWMWKDKPAGV | 801 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi13g1360 | 801 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 180 | 195 | IPR002343 | GO:0003723|GO:1990904 | |
Mibi13g1360 | 801 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 332 | 349 | IPR002343 | GO:0003723|GO:1990904 | |
Mibi13g1360 | 801 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 291 | 303 | IPR002343 | GO:0003723|GO:1990904 | |
Mibi13g1360 | 801 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 276 | 291 | IPR002343 | GO:0003723|GO:1990904 | |
Mibi13g1360 | 801 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 180 | 261 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | Gene3D | - | 176 | 267 | IPR012677 | - | |
Mibi13g1360 | 801 | SUPERFAMILY | WW domain | 696 | 727 | IPR036020 | GO:0005515 | |
Mibi13g1360 | 801 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 271 | 351 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 721 | 762 | - | - | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 636 | 673 | - | - | |
Mibi13g1360 | 801 | Gene3D | - | 692 | 739 | - | - | |
Mibi13g1360 | 801 | FunFam | flowering time control protein FCA isoform X2 | 175 | 266 | - | - | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 65 | 133 | - | - | |
Mibi13g1360 | 801 | SUPERFAMILY | RNA-binding domain, RBD | 271 | 377 | IPR035979 | GO:0003676 | |
Mibi13g1360 | 801 | CDD | RRM2_FCA | 272 | 351 | IPR034645 | - | |
Mibi13g1360 | 801 | Gene3D | - | 268 | 359 | IPR012677 | - | |
Mibi13g1360 | 801 | FunFam | Flowering time control protein FCA | 267 | 357 | - | - | |
Mibi13g1360 | 801 | Pfam | WW domain | 696 | 722 | IPR001202 | GO:0005515 | |
Mibi13g1360 | 801 | CDD | WW | 694 | 724 | IPR001202 | GO:0005515 | |
Mibi13g1360 | 801 | ProSitePatterns | WW/rsp5/WWP domain signature. | 697 | 722 | IPR001202 | GO:0005515 | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 481 | 570 | - | - | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 346 | 434 | - | - | |
Mibi13g1360 | 801 | SMART | rrm1_1 | 272 | 347 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | SMART | rrm1_1 | 181 | 257 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | SMART | ww_5 | 692 | 724 | IPR001202 | GO:0005515 | |
Mibi13g1360 | 801 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 691 | 724 | IPR001202 | GO:0005515 | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 636 | 676 | - | - | |
Mibi13g1360 | 801 | SUPERFAMILY | RNA-binding domain, RBD | 165 | 265 | IPR035979 | GO:0003676 | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 516 | 566 | - | - | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 591 | 616 | - | - | |
Mibi13g1360 | 801 | MobiDBLite | consensus disorder prediction | 728 | 762 | - | - | |
Mibi13g1360 | 801 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 182 | 245 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 273 | 336 | IPR000504 | GO:0003723 | |
Mibi13g1360 | 801 | PANTHER | RNA BINDING PROTEIN | 96 | 648 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi13g1360 | Mibi-ChrMibi13 | 20064492 | 20076450 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi13g1360 | 178 | 407 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.451 | 7.72e-17 | 83.2 |