Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1360 ATGTTGGGAATACTTCGCTATTTCGTCCTCCTCGAGAATCCTCACATTTCGTCGCCCTCAAATTCACTCAGAAGTCAGAACCCAGAAATTCCCAGTTACACTCACTTCTCTCTGCTCCTATTTCCCCGCAAAAAAAAAAAAAAAATTAGGGTTAGGGATTTCTCTCTGTTCGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACAACAATTATGATTCTCACCCATATCGTCAGTCCAGAGCTCCGTCTCGCTTCTCCGATGGTCCTCCTTTGAACAATCGCGGCGGCGGTGGGGGAGGAGCCTTTCACCACCGTCAATTTGATAGCCCACCCCGTCGTTCTCCGGCGAGAGGTCAAGGGTTTCGATCACCGGGTTTTGCCGCCGGCGGTGGCGATGGGTTTAGGCCTATGAGTGATGAGGGAGGGTTTGGGTTTAACGGCCGTCCAGGTCAGCAATTGTCTGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGTTCGCCGGACCGTTTCGGTGGGGAAAGTTTTGCCAAACTTTTTGTTGGAAATGTTCCACGGACAGCAACTGAAGAAGATATTCGGCCTTCGTTTGAGCAACATGGGAATGTGGTTGAGGTTGCTTTGATCAAGGATAGAAAGACAGGACAGCAGCAAGGTTGTTGTTTCATAAAGTACGCTTCCCCTGATGAAGCTGATCAGGCAATTAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTGTTGGTCCAATTCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTTGAATACAAATTATTCGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAAGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTCTATCTTATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCATAGAGATATGGCCCTGGCTGCTATAAATGCACTGAATGGAATTTTTACAATGAGAGGTTGTGATCAACCTTTAACTGTACGATTTGCTGATCCTAAGAGACCTCGTCAAGGGGATTCCAGGGGTCCTGCATTTAGTTCAAGATTTGAAGTGCCAGGTCCTAGACATCCAGGATCTGGTCCAAGATTTGAAGCACCAAGTTCTAGGCCTCCATTCATTGGTAATGATCCCATGGGTGAACAAGCCTCTGCTCCCAATGCTTGGCGTCCAATGCATCCTTCAAATATGGGGCCGTCATCTAATGCTGGTCTACATAACCTGAGGCCTCCATTGCTTTCAAGATCTGGGGACATGGACATGACATGGGCAATGAATGCAGGTGGTCCTGGGAATGGCTTTGGAGGCCCTCCAAACGGTCCTTTTCAAAGACAGACTCTGTCACCAATGTCACAACAGAATTTCAATCGAAACTTTCTGCATATTCCACCGGCCAGCCAACCAATGTCGCCACTGCAGAAGCCTATTCATTCACCTCAGGACAAGCCTTCTCCCCTCCAGCTGTACCCTCCAGCACCCACCCCTTACTCTCATACACCAGCTTCTCTTGCATCATTTAGGCAGGCTGGCCAACCGCAAGTTCCGTTATCTGCTGGTCCATTTCCTTCACAACAGGTCCATGGTGTAAATGGACACTTTCCAGTTTCTCAGCCCCAAGCTCAGCAGGTTGCTTCATCTGCTGCAGCTGCCCAGGGCCATGCCCCTCTAGATACCAGCTTGAGATTAAACACAACATTGACCGCCACAAATCAACAGCAACTATCTACATCTTTGCAGCAGCAGCAGCCACTTCAGCATCAGCAGTCTCCATCCCAGTTGGCACAAATGTTGTCACAACAAACTCAGACTTTGCAGGCAAGCTTCCATTCATCTCAAAAGGCCTTCTCCCAGCTTCAACAACAGCTACAGATGATGCAACCATCTAGTCAAGGTTTACCAGTGCAGCAAAATGCAGAATCTATGAAAAAGCAGTCTCAGTGGACAGGGGCTGCACCAACTGCAGATGTGCCTTCATCCTTATCTGCTGCTGCTGTACCTCCAATAGGCCAGAACATAGTTCCTGCAAAATGTGATTGGACAGAGCATATATCTCCTGAGGGCTTTAAGTACTACTACAATAGTGTTACTGGCGAAAGTCGGTGGGAGAAACCGGAAGAGTTGACTTTATCAGAACAGCAAAAGCCATCTGTTCAGCAATCTCAAAGTCAGTCACAGCCTTCAATATCACCTCAACAAGTTCCTCAAATGCAACAATTGCGGCCTCAAGGCCAACTCCAAGGGCAGGTTCTCCAGCAACAGTTCCAGGCTTATGCAGGTGCAGGTCATCAAAATGCTCAGGGAATGTATACTATGCAAGAGTGGATGTGGAAAGATAAGCCTGCAGGGGTTTGA 2406 0.4792 MLGILRYFVLLENPHISSPSNSLRSQNPEIPSYTHFSLLLFPRKKKKKIRVRDFSLFAKLDRHRGDRYGNNNYDSHPYRQSRAPSRFSDGPPLNNRGGGGGGAFHHRQFDSPPRRSPARGQGFRSPGFAAGGGDGFRPMSDEGGFGFNGRPGQQLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGNVPRTATEEDIRPSFEQHGNVVEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLTVRFADPKRPRQGDSRGPAFSSRFEVPGPRHPGSGPRFEAPSSRPPFIGNDPMGEQASAPNAWRPMHPSNMGPSSNAGLHNLRPPLLSRSGDMDMTWAMNAGGPGNGFGGPPNGPFQRQTLSPMSQQNFNRNFLHIPPASQPMSPLQKPIHSPQDKPSPLQLYPPAPTPYSHTPASLASFRQAGQPQVPLSAGPFPSQQVHGVNGHFPVSQPQAQQVASSAAAAQGHAPLDTSLRLNTTLTATNQQQLSTSLQQQQPLQHQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLPVQQNAESMKKQSQWTGAAPTADVPSSLSAAAVPPIGQNIVPAKCDWTEHISPEGFKYYYNSVTGESRWEKPEELTLSEQQKPSVQQSQSQSQPSISPQQVPQMQQLRPQGQLQGQVLQQQFQAYAGAGHQNAQGMYTMQEWMWKDKPAGV 801
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1360 801 PRINTS Paraneoplastic encephalomyelitis antigen family signature 180 195 IPR002343 GO:0003723|GO:1990904
Mibi13g1360 801 PRINTS Paraneoplastic encephalomyelitis antigen family signature 332 349 IPR002343 GO:0003723|GO:1990904
Mibi13g1360 801 PRINTS Paraneoplastic encephalomyelitis antigen family signature 291 303 IPR002343 GO:0003723|GO:1990904
Mibi13g1360 801 PRINTS Paraneoplastic encephalomyelitis antigen family signature 276 291 IPR002343 GO:0003723|GO:1990904
Mibi13g1360 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 261 IPR000504 GO:0003723
Mibi13g1360 801 Gene3D - 176 267 IPR012677 -
Mibi13g1360 801 SUPERFAMILY WW domain 696 727 IPR036020 GO:0005515
Mibi13g1360 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 351 IPR000504 GO:0003723
Mibi13g1360 801 MobiDBLite consensus disorder prediction 721 762 - -
Mibi13g1360 801 MobiDBLite consensus disorder prediction 636 673 - -
Mibi13g1360 801 Gene3D - 692 739 - -
Mibi13g1360 801 FunFam flowering time control protein FCA isoform X2 175 266 - -
Mibi13g1360 801 MobiDBLite consensus disorder prediction 65 133 - -
Mibi13g1360 801 SUPERFAMILY RNA-binding domain, RBD 271 377 IPR035979 GO:0003676
Mibi13g1360 801 CDD RRM2_FCA 272 351 IPR034645 -
Mibi13g1360 801 Gene3D - 268 359 IPR012677 -
Mibi13g1360 801 FunFam Flowering time control protein FCA 267 357 - -
Mibi13g1360 801 Pfam WW domain 696 722 IPR001202 GO:0005515
Mibi13g1360 801 CDD WW 694 724 IPR001202 GO:0005515
Mibi13g1360 801 ProSitePatterns WW/rsp5/WWP domain signature. 697 722 IPR001202 GO:0005515
Mibi13g1360 801 MobiDBLite consensus disorder prediction 481 570 - -
Mibi13g1360 801 MobiDBLite consensus disorder prediction 346 434 - -
Mibi13g1360 801 SMART rrm1_1 272 347 IPR000504 GO:0003723
Mibi13g1360 801 SMART rrm1_1 181 257 IPR000504 GO:0003723
Mibi13g1360 801 SMART ww_5 692 724 IPR001202 GO:0005515
Mibi13g1360 801 ProSiteProfiles WW/rsp5/WWP domain profile. 691 724 IPR001202 GO:0005515
Mibi13g1360 801 MobiDBLite consensus disorder prediction 636 676 - -
Mibi13g1360 801 SUPERFAMILY RNA-binding domain, RBD 165 265 IPR035979 GO:0003676
Mibi13g1360 801 MobiDBLite consensus disorder prediction 516 566 - -
Mibi13g1360 801 MobiDBLite consensus disorder prediction 591 616 - -
Mibi13g1360 801 MobiDBLite consensus disorder prediction 728 762 - -
Mibi13g1360 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 245 IPR000504 GO:0003723
Mibi13g1360 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Mibi13g1360 801 PANTHER RNA BINDING PROTEIN 96 648 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mibi13g1360 Mibi-ChrMibi13 20064492 20076450 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1360 178 407 Eukaryotic Initiation Factors Gene Family AT1G71770 27.451 7.72e-17 83.2