Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1331 ATGAAGTCATTTCTGTCATTGAACCATACTGATACTGACGTCAATTGTTCTCACCTTGATTCTAATCACTCGATGGCTCGCGTTCCTTATCCATATGGTGATCCTTTATATGGGGGCTCTTTAGCATCTTATGGATCGCAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGATGGGTCTTGCATCTACAAGAGTTGCATTGCCCCTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCGAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGGGCAAAGCTTGAGGCTCAAAACAAACTTGTCAAAAACCGTAAGCCGTATCTTCACGAGTCTCGGCATCGCCATGCTTTGAACAGGGTTAGGGGATCAGGAGGACGTTTCCTCAGCACCAGACAGCTTCAACAGTCCAATGCACAGGTTGTGACTAGTGCCAATTCTGGTTCTGACTCTGTCAACTTGTATCAAAAGATAGATACATCGGAGGTGGGGATTCATCCCTCAAGGACAGGCACCGGCGAAAAAGCATCTTCTATCTCGACCTGCTCTGATAGGACAAGTGGGTCCAGTAACAATGTGAATTTCAGGCAGCCAGAGTGCAAGTTCTTGGGGAACTCTCCAAACATGGGCAGTGCATCACAGTGCAGCGGTGGGATCAACTTTGGAGGTGGGACCCAGCAACGTGTACCCATTGTCCGGTGA 711 0.4768 MKSFLSLNHTDTDVNCSHLDSNHSMARVPYPYGDPLYGGSLASYGSQAINQPQMVPQMMGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLVKNRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQVVTSANSGSDSVNLYQKIDTSEVGIHPSRTGTGEKASSISTCSDRTSGSSNNVNFRQPECKFLGNSPNMGSASQCSGGINFGGGTQQRVPIVR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1331 236 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 201 IPR001289 GO:0003700|GO:0006355
Mibi13g1331 236 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Mibi13g1331 236 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Mibi13g1331 236 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Mibi13g1331 236 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Mibi13g1331 236 Gene3D - 74 136 - -
Mibi13g1331 236 MobiDBLite consensus disorder prediction 167 194 - -
Mibi13g1331 236 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Mibi13g1331 236 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1331 Mibi-ChrMibi13 19503571 19505140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1331 19 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.871 2.28e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mibi13g1331 CBFB_NFYA 1.4e-27 No_clan