LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g1310	ATGAACGGTGAATCTGCTCCTACCGTTTTCTCACATGCAGAGAATAGGGAAGGGCCTGGGGAAATAATGGAGGAGGAGGAGGTGGTGGGACCCATGGCTGGGGATGAAGAAGAAGAAGGAGAGGTAGGTTCTAGCTTGACAATGGAGAGGGTGGCTGTAGCTAAGAAGTTCATTGAGAATCATTATAGATCTCATTTGAAGCTCATACGAGATCGTAAAGAGAGGCGTTTAGTACTTGAAAAGAAGTTAGCATCTTCTCGTGTGCCAGAAGAAGAACAGATACATCAACTGAAGGATTTAGAGCGCAAGGAGACTGAGTATATACGGTTAAAACGAAACAAAATATGTGTCAGTGATTTTGATCTTCTAGATATTATTGGGAGGGGAGCCTTTGGAGAGGTAAGACTTTGTCGCGAGAAGAAATCAGGCAATATTTATGCCATGAAAAAGTTGAAGAAATCTGAAATGGTCATCAGGGGTCAGGTTGAACATGTTAGAGCTGAGCGGAACCTGTTAGCAGAAGTTGCAAGTCATTGCATTGTGAAACTCTATTACTCCTTTCAGGATGCGGATTACTTATATCTGATAATGGAGTATTTACCTGGTGGTGATTTAATGACTTTGCTGATTAGAGAAGAAACTTTGACTGAAAGTGTGGCTAGATTTTACATCGCTCAAAGTGTATTGGCCATAGAATCTATTCATAAACATCATTACATTCATCGTGATATAAAACCTGACAACCTTTTGTTGGACAAAAATGGTCACATTAAACTCTCTGATTTCGGTCTTTGCAAGCCACTTGATTGTGCAAATTTATCTTCAATAAATGAAGGTGAAGTCTTCGATGATGAGAATTTGAGTGATACCATGGACATTGATGGATCTTTACCAAATTCAAAATGTGGAAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAGCATTGGCAAATAAACAGGAGGAAGTTGGCATTTTCCACAGTTGGAACTCCAGACTATATTGCTCCCGAAGTGTTGCTTAAAAAGGGATATGGTGTGGAGTGTGACTGGTGGTCTCTTGGAGCTATTATGTATGAGATGCTTGTTGGTTATCCCCCATTTTACTCTGATGACCCTGTGACAACGTGCAGAAAGATTGTACATTGGAAACATCATTTAAAATTTCCAGAGGAGGCAAGGTTGACACCTGAGGCAATGAATCTAATTTGTAGGTTGCTTTGTGATGTCGACCAAAGACTTGGTACCAGAGGGGCAGATGAAATTAAAGCACATCCTTGGTTCAAAGATGTTGCATGGGATAAACTCTATGAAATGGAAGCAGCATTCAAACCTCAAGTCATTGGAGAGCTTGACACACAGAATTTTATGAAATTTGATGAGGTTGAACAACCAAAACCAGCAAGAACTGGATCTGGTCCCATCAGAAAGATGCTATTGACTCCTCAAGATCTTAGCTTTGTTGGTTATACATATAAGAATTTTGACGCAGTCAAGGGCATGCATCATATGGATAGGGGGATGAGGAGCATGTCATCACCTGTTCGACCAGTCACTGAATCTCCACATAGTAATGAGCCAGGCTTCTATTTGTACTCATTTAGTGATTCTGGAATAGACTATCCTTCTGGATTCTCGAGCCAGTAA	1644	0.4088	MNGESAPTVFSHAENREGPGEIMEEEEVVGPMAGDEEEEGEVGSSLTMERVAVAKKFIENHYRSHLKLIRDRKERRLVLEKKLASSRVPEEEQIHQLKDLERKETEYIRLKRNKICVSDFDLLDIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMVIRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDLMTLLIREETLTESVARFYIAQSVLAIESIHKHHYIHRDIKPDNLLLDKNGHIKLSDFGLCKPLDCANLSSINEGEVFDDENLSDTMDIDGSLPNSKCGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKHHLKFPEEARLTPEAMNLICRLLCDVDQRLGTRGADEIKAHPWFKDVAWDKLYEMEAAFKPQVIGELDTQNFMKFDEVEQPKPARTGSGPIRKMLLTPQDLSFVGYTYKNFDAVKGMHHMDRGMRSMSSPVRPVTESPHSNEPGFYLYSFSDSGIDYPSGFSSQ	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g1310	547	FunFam	Non-specific serine/threonine protein kinase	326	445	-	-
	Mibi13g1310	547	ProSiteProfiles	AGC-kinase C-terminal domain profile.	428	501	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Mibi13g1310	547	PANTHER	SERINE/THREONINE-PROTEIN KINASE	41	477	-	-
	Mibi13g1310	547	Gene3D	Phosphorylase Kinase; domain 1	110	205	-	-
	Mibi13g1310	547	FunFam	Non-specific serine/threonine protein kinase	204	271	-	-
	Mibi13g1310	547	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Mibi13g1310	547	SMART	pkinase_C_6	428	493	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Mibi13g1310	547	SUPERFAMILY	Protein kinase-like (PK-like)	117	490	IPR011009	-
	Mibi13g1310	547	Pfam	Protein kinase domain	122	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g1310	547	Pfam	Protein kinase domain	320	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g1310	547	SMART	serkin_6	120	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g1310	547	ProSiteProfiles	Protein kinase domain profile.	120	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi13g1310	547	Gene3D	Transferase(Phosphotransferase) domain 1	206	444	-	-
	Mibi13g1310	547	MobiDBLite	consensus disorder prediction	1	22	-	-
	Mibi13g1310	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Mibi13g1310	547	FunFam	Non-specific serine/threonine protein kinase	81	203	-	-
	Mibi13g1310	547	CDD	STKc_NDR_like	118	492	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g1310	Mibi-ChrMibi13	18996268	19005936	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g1310	36	502	AGC Kinase Gene Family	AT4G33080	76.907	0.0	765

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Mibi13g1310		Pkinase	4.2e-43	CL0016