Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1306 ATGAGATCAGTCGCCGTCGCTGTCACCGGCGGCTCCGGCTCCGGGGCCGGCAGGATTAGCCGGCGAGCCGTACAGTGGGCGGTGGAGAATCTTATGCCTCAAGCCGATAGGTTCATCTTAGTTCATGTTATGCCCAGAATCGCTTCTATTCCAACCCCATCTGGAGAGTGTATCCCTGTTATGGATCTAGATGCCAATGTGGCAGCAGCTTACATTCAGGATGTAAAGGAGAAGTTCGAGCAAATCTTTGTTCCATTCAAGAAACTCTGTAAAGCAAGCACAGTTGAAACTTTGTTGCTGGAAGATGACAATCCTGCAACTGCACTACTTAGATATATATCAGAATCAGACATTCAAATATTAGTTTTGGGAACTGATTCTCCAAATTTTATAACAAGGAAGATAAAAGGACCAGGTATACCAACGACCGTTCTGAGAAGTGCTTCTGACACTTGTGACGTATATCTTATAGCTAGAGATAGAATTATATCAAAATTAGCTGATTCTTCAACTTCACCCTCACGTGAGACTAGCTCTAGGTACTCCGTGTCTACACAAGGGAATACAGTAGATGTTGGTGCTCACATTGGTAGAGAAATGACTGGACTTAATTCTTCCACTACAGGACCTGAATTTCTCGCAAACAGATTCCCATCGGTGTCAGAGTGGAGTTTCATAGGTTCTCAAACATCCAGCCCTGCAAATTCTATTAAAAGTCTCTCTATAAATGAAAGCAATCTAGAAAGCTTTAGAGATGATGCTGAAACCGCAAGCATTCGCTCATTTGATTCCATAGCTTCTGCACAAATTGAACAACCAGCAATACAAGAAGTAAAGCAGCTGCAGCTGGAGTTACGGAATACCATTTCCATGTATAAACAGGTTTGTGAAGAGCTGGCTCTTCATCAAAATAAGGTTCATTTACTTTCGGCTGAATATCTTGAAGAATCAAGAAGAGTGAATGATTCCCTGAAAAGAGAGGAGACTTTGAGAAAGATTGCTGCTGCAGAAAAAGAAAAGTACTTGAAAGTCATGAAGGAACTTGAGGAGGCAAAAATTAAGTTTGCGAAAGAATCTTATGAAAGGCAGATAGCTGAACTTAATGTCGCTAAAGAATCTATAGAAAGGAGGAGAATAATTGATACATTGCTCTCAAGTGACAAGAGGTACAGAAAGTACACTATGGACGAAATTAAAGATGCAACAAACGACTTCTCCATGGATCTTTTAATTGGTGAAGGAGGTTATGGGAAGGTTTATAAGTGCAGCCTTGATCACACTACAGTAGCTGTAAAGGTCCTGCACCAGGATGCAGTTAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTGAGTCAGCTACACCATCCACACATGGTTTTGCTGCTAGGGGCCTGTCCTGAAACTGGCTGCCTTGTTTATGAATACCTGGAAAATGGAAGTCTTGAAGACTATCTTTTCAGTAACAGTGGAAAACCACCACTTCCTTGGTTCATTCGATTCCGTATAGTTTTTGAAGTGGCTTGTGGGCTATCATTCTTGCATAATTCAAAGCCTGAGCCGATTGTTCATCGTGATATGAAACCAGGAAATATCTTGTTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGATTGGCTAAGCTCATTTCAGATGTCATACCTGACAATATCACTGAGTACAGAGAATCTGTGCTTGCTGGTACTCTGCATTACATGGATCCAGAGTATCAGAGGACAGGCACTGTCCGACCAAAATCAGACGTATACGCATTTGGAGTTATAACTCTTCAACTGATAACTGCCCGCCATGCACGTGGAGTCATTTTGGCTGTTGAAAATGCTGTTACAAATGGCTCCTTGTCTCATGTTTTAGATAAATCAGCCGGAGATTGGCCATTGACTGAGGCAGAAGAGTTGGCTCAAATTGCTTTAAGATGCTCGGCATTGAGATGCAGAGATAGACCAGATCTTGATACTGAAGTTCTTCCACTGCTTAAAAGAATTTGTGATGTGGCAAATGCTACTGCAAAAGTGGGAAGAAATAGTAACACAGGCCCACCAAGCCAATATTATTGCCCAATCCTTCAGGAAATAATGGATGATCCACATATCGCCGCCGATGGTTTTACTTACGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCTGTAACAAAGCTTACAATGCAGCACTCTACACTGATTCCAAACCATACATTACGTTCTGCCATTCAGGAGTGGAGATCAGGACAGAAGTGA 2280 0.4197 MRSVAVAVTGGSGSGAGRISRRAVQWAVENLMPQADRFILVHVMPRIASIPTPSGECIPVMDLDANVAAAYIQDVKEKFEQIFVPFKKLCKASTVETLLLEDDNPATALLRYISESDIQILVLGTDSPNFITRKIKGPGIPTTVLRSASDTCDVYLIARDRIISKLADSSTSPSRETSSRYSVSTQGNTVDVGAHIGREMTGLNSSTTGPEFLANRFPSVSEWSFIGSQTSSPANSIKSLSINESNLESFRDDAETASIRSFDSIASAQIEQPAIQEVKQLQLELRNTISMYKQVCEELALHQNKVHLLSAEYLEESRRVNDSLKREETLRKIAAAEKEKYLKVMKELEEAKIKFAKESYERQIAELNVAKESIERRRIIDTLLSSDKRYRKYTMDEIKDATNDFSMDLLIGEGGYGKVYKCSLDHTTVAVKVLHQDAVNKKEEFLKEVEILSQLHHPHMVLLLGACPETGCLVYEYLENGSLEDYLFSNSGKPPLPWFIRFRIVFEVACGLSFLHNSKPEPIVHRDMKPGNILLDRNYVSKISDVGLAKLISDVIPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITARHARGVILAVENAVTNGSLSHVLDKSAGDWPLTEAEELAQIALRCSALRCRDRPDLDTEVLPLLKRICDVANATAKVGRNSNTGPPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTKLTMQHSTLIPNHTLRSAIQEWRSGQK 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1306 759 ProSitePatterns Protein kinases ATP-binding region signature. 411 432 IPR017441 GO:0005524
Mibi13g1306 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Mibi13g1306 759 Coils Coil 331 377 - -
Mibi13g1306 759 Gene3D HUPs 1 157 IPR014729 -
Mibi13g1306 759 SMART Ubox_2 692 754 IPR003613 GO:0004842|GO:0016567
Mibi13g1306 759 SMART serkin_6 405 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1306 759 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 138 - -
Mibi13g1306 759 CDD RING-Ubox_WDSUB1_like 693 733 - -
Mibi13g1306 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 759 IPR013083 -
Mibi13g1306 759 Gene3D Phosphorylase Kinase; domain 1 384 477 - -
Mibi13g1306 759 CDD STK_N 3 159 - -
Mibi13g1306 759 Pfam Protein tyrosine and serine/threonine kinase 410 661 IPR001245 GO:0004672|GO:0006468
Mibi13g1306 759 Gene3D Transferase(Phosphotransferase) domain 1 478 686 - -
Mibi13g1306 759 SUPERFAMILY RING/U-box 687 755 - -
Mibi13g1306 759 ProSiteProfiles U-box domain profile. 688 759 IPR003613 GO:0004842|GO:0016567
Mibi13g1306 759 ProSiteProfiles Protein kinase domain profile. 405 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1306 759 Pfam U-box domain 690 757 IPR003613 GO:0004842|GO:0016567
Mibi13g1306 759 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 378 477 - -
Mibi13g1306 759 PANTHER OS02G0152300 PROTEIN 5 753 - -
Mibi13g1306 759 SUPERFAMILY Protein kinase-like (PK-like) 388 661 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1306 Mibi-ChrMibi13 18938145 18943903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1306 3 756 Plant U-box Gene Family AT5G57035 54.356 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi13g1306 PK_Tyr_Ser-Thr 2.3e-41 CL0016