Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1288 ATGATGTTTATTCGAAAAACAGGACTGTTCCAAATTGCAGGGAAGGGTATAGACCCTCACCACCATGACACGGATTTTATTCTAACAACTCCTGCAATCAAATTGGGTTTAATTACTGCAAAAGGTGTTGTGCCTTACATCCTAGTCAGATTTTCAATTGGTATCGTATTTCTATTTATGTTGTTGATTTATACATGCCGGAGAAGGCACATATCAATGTTCGAAAACATCGAGGATTTTATAAGACTTCATGACCTCATTCCAATAAGGTACTCCTACAAGGATTTGAAGACAATGACCAATGGTTTCAGCAATAAGTTGGGTGAAGGAGGATTCGGCACTGTATACAAAGGGAAGTTAAGGAGTGGATATGATGTTGCTATCAAAATGTTGGGTAAATCCAAAGCCAATGGCCAAGAATTCATTAGTGAAGTGGCAACTATTGGTAGGATACACCATTTTAATGTAGTACACCTTGTTGGATTCTGTGTGGAAGGAACAAAGAGAGCTCTTGTCTATGATTTCATGTCTAATGGATCATTGGATAAATATATATTTTCTAAACAAGAAAGTATCTCATTGAGTTATCACAAGATATATGAGATATCTCTTGGAGTGGCTCGTGGGGTTGCTTACCTTCATCATGGATGTGATATGCAAATATTGCATTTTGATATTAAGCCCCACAACATTCTTCTTGACGAAAACTTCACTCCAAAGATTTCAGATTTCGGACTAGCAAGATTATATTCTACTGATGATAGCATTGTCACTTTGACAGCAGCAAGAGGCACAATAGGATACATGGCTCCAGAATTATTCTATAAGAATATTGGGGGAGTGTCCTACAAGGCCGATATTTATAGCTTCGGAATGCTTTTGATGGAAATGGCTAGTCGAAGAAGGAACTTGAACCCACATGCTGAACATTCTAGCCAACTTTACTTCCCTTTGTGGATTTATGACCAATTTGATGAAGATAAAGATATAGAAATGGAAGATTTGACAGAAGAGGAGAAGGACTTAGCAAAGAAATTGTTCATAGTTGCTCTATGGTGTATACAATTAAAGCCTGTAGATCGCCCTTCAATGAGCAAAGTAATAGAAATGCTAGAAGCAAATGACGTTGAAAGTCTTGAAATGCCTCCAAAACCTTCTTTATATCCTGACGGAGAAGTGTTGTTGGATCATGAATCCTCCTCTAACCAGGAAACATCCACTATCTCTATACTTTCTCATAGTAGTTCAGGTGATCAAGGCACCAGTAGTCGAAAATAA 1278 0.3772 MMFIRKTGLFQIAGKGIDPHHHDTDFILTTPAIKLGLITAKGVVPYILVRFSIGIVFLFMLLIYTCRRRHISMFENIEDFIRLHDLIPIRYSYKDLKTMTNGFSNKLGEGGFGTVYKGKLRSGYDVAIKMLGKSKANGQEFISEVATIGRIHHFNVVHLVGFCVEGTKRALVYDFMSNGSLDKYIFSKQESISLSYHKIYEISLGVARGVAYLHHGCDMQILHFDIKPHNILLDENFTPKISDFGLARLYSTDDSIVTLTAARGTIGYMAPELFYKNIGGVSYKADIYSFGMLLMEMASRRRNLNPHAEHSSQLYFPLWIYDQFDEDKDIEMEDLTEEEKDLAKKLFIVALWCIQLKPVDRPSMSKVIEMLEANDVESLEMPPKPSLYPDGEVLLDHESSSNQETSTISILSHSSSGDQGTSSRK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1288 425 FunFam PR5-like receptor kinase 176 383 - -
Mibi13g1288 425 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524
Mibi13g1288 425 Gene3D Transferase(Phosphotransferase) domain 1 176 381 - -
Mibi13g1288 425 PANTHER RUST RESISTANCE KINASE LR10-RELATED 75 399 IPR045874 GO:0004672
Mibi13g1288 425 ProSiteProfiles Protein kinase domain profile. 101 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1288 425 MobiDBLite consensus disorder prediction 396 425 - -
Mibi13g1288 425 SUPERFAMILY Protein kinase-like (PK-like) 86 372 IPR011009 -
Mibi13g1288 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Mibi13g1288 425 Pfam Protein kinase domain 105 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1288 425 FunFam serine/threonine-protein kinase PBS1-like 72 175 - -
Mibi13g1288 425 MobiDBLite consensus disorder prediction 379 425 - -
Mibi13g1288 425 Gene3D Phosphorylase Kinase; domain 1 68 175 - -
Mibi13g1288 425 SMART serkin_6 101 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1288 Mibi-ChrMibi13 18196589 18197866 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1288 90 419 Receptor kinase-like Gene Family AT5G38280 50.149 2.88e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mibi13g1288 Pkinase 7.6e-48 CL0016