Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1260 ATGTTACCAACTTATCCTTATTCCCTTTCTTCTTCTTCTAATTCCAATTCTACTTATTATTCTACTATGCCTATTATAGATCTTAATATTGTTGATGATCAAAGCCATGAGCTAATTTTTAGCCCAACCCATCAACCTTCTTCATCCTCTTCTTCTCTATCATCATGCCCTATTCTCTTTAGCCCTTCTCATCATCATCAAGATCACGCTGGATCTTCCCACTGGGAGTCCAAGAACTTACAAAATGATCATGACGAGGCTTCTGGGAGGCATATTATTGCTTCAAGAGGATCATGGAATGATCCAGATCAAGAAGAGAAGGGTGGTGGTGTTGAGATGATCAGAAAGAGTAGAGGCCTGAAACTGAAAGTTTGGAAGAGATCATCAGCAGCATCAGGATCATTAGAGAAGGAGGACAATGATGAAAATCATAATCATAATCATAATCAAACTGAGGATAATAATGATTCAGCGATGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGTGGCTTCTTCAGATCATAATCATATAAGTAAGGCTTCTTCCTCAACTTCTTCAGAAGATCAGAATCAAGGAAGATCATCATTATTGTCTCCTAGAGGCACTGATCATAATAGCAGCAGCAGCAGCAACAATTCTTCAACCCACAGTAACAGTAATAATCATAGTAATCATATTACTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCTAAGTCTCTATGCAACGCATGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCGGCTGCAATTGGTGGGTCGCCGGATCTGAAGGCGGCGGCTGAGAAGTCTACGGTGAAAGGGACTGCTTATAAGGTTCATGGAAACAAAGGGAAGAAGTTGAAATTGGAGTGTGAGAATCATCATCAGATGAAGAAGAAGAAGAAGCACAAGTTTGAAGATTATGATGATCATCATCAAGCCAAGGAAGTTAATGATAATGGTATTCATTATAACAATAATTCAAGAGGGAAATCATCATCATCATCAATAATAAACAAGTTTAGCTTTGAGGATTTCACAGTGAGCTTGATGGGTAAGAATTTGGCAGCTGCATCACAAGTTTTCCCTCAAGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTTCATGGATAG 1218 0.4048 MLPTYPYSLSSSSNSNSTYYSTMPIIDLNIVDDQSHELIFSPTHQPSSSSSSLSSCPILFSPSHHHQDHAGSSHWESKNLQNDHDEASGRHIIASRGSWNDPDQEEKGGGVEMIRKSRGLKLKVWKRSSAASGSLEKEDNDENHNHNHNQTEDNNDSAMKWMPSKMRMMRKMMVASSDHNHISKASSSTSSEDQNQGRSSLLSPRGTDHNSSSSSNNSSTHSNSNNHSNHITVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAIGGSPDLKAAAEKSTVKGTAYKVHGNKGKKLKLECENHHQMKKKKKHKFEDYDDHHQAKEVNDNGIHYNNNSRGKSSSSSIINKFSFEDFTVSLMGKNLAAASQVFPQDEKEAAILLMALSCNGLVHG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1260 405 MobiDBLite consensus disorder prediction 40 61 - -
Mibi13g1260 405 CDD ZnF_GATA 235 263 IPR000679 GO:0006355|GO:0043565
Mibi13g1260 405 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 404 - -
Mibi13g1260 405 Gene3D - 228 283 IPR013088 GO:0006355|GO:0008270
Mibi13g1260 405 MobiDBLite consensus disorder prediction 100 119 - -
Mibi13g1260 405 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 269 - -
Mibi13g1260 405 MobiDBLite consensus disorder prediction 176 229 - -
Mibi13g1260 405 MobiDBLite consensus disorder prediction 179 229 - -
Mibi13g1260 405 ProSiteProfiles GATA-type zinc finger domain profile. 234 266 IPR000679 GO:0006355|GO:0043565
Mibi13g1260 405 MobiDBLite consensus disorder prediction 132 153 - -
Mibi13g1260 405 SMART GATA_3 230 281 IPR000679 GO:0006355|GO:0043565
Mibi13g1260 405 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Mibi13g1260 405 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Mibi13g1260 405 MobiDBLite consensus disorder prediction 40 158 - -
Mibi13g1260 405 MobiDBLite consensus disorder prediction 67 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1260 Mibi-ChrMibi13 17427555 17429407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1260 158 405 C2C2-Gata Transcription Factor Family AT4G26150 37.795 1.45e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi13g1260 GATA 4.7e-17 CL0167