Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1242 ATGACGATGATGGAGTCTAGAATCACCATCTCTGATTCTAACGAAATCAGCAATAATGGAAGCGGAATTTGCTGTTTAGCTAGCAGCTCTCAAACCCATCTCACTCCCGAAGCTTCACCTCCTCTAGATATTGTTGCCCTAAATCGCCTTTCCGACAACCTCGGTGCGATCTTTGAAGTGTCGGAGTCCGAGGATTTCTTCGCTGATGCTAGAATTGTTCTTAGCGACGGTCGGGAAATTCCGGTTCATCGATGTATTTTGGCGGCGAGAAGTTCTTTTTTTAAGGGTGTGTTGTGTGGGAAAGATCAGAGGAATGGGGTGAAGTTGGAATTGAAGGAATTGGCTAAGGATTATGAGGTTGGTTTTGATGCGATTTTGGGTGTTGTGAGTTATTTGTATAGTGGGAAAGTTAGGTCTTCGCCTAAAGGTGTTTGTGTTTGTGTGGATGATGATTGCTCTCATGTTGGATGTCGACCTGCTGTGGAATTCATGGCTGAACTTCTCTATGCTTCTTCCACGTTTGAAATATCTGAGTTGAGACATCTGCTACAAATTCTTGACAAGGTAGCAGCAGATGAAATTTTGCTGGTTCTTTCTGTTGCAAATATATGTGGTAAATCCTGTGAGAAACTGCTAGCAAGGTGTGCTGAGTTGATTGTTAAATCTGATGTTGATATCATTAGCCTTGAAAAGGCTTTGCCACAGCATATTGTGAAGCAAATTATCGATAAACGTATAGAACTAGGCTCGAACAAGCCCAAGGATATATGTTTTCCAGATAAATATGTGAAGAGAATACATAGGGCTCTTGATTCTGATGATGTTGAGTTAGTAAGGTTGCTTTTGAGGGAGGGCCATACTAATTTGGATGCTGCTTATGCCCTTCACTATGCTGTTGCGTACTGTGATGCCAAGATCACAACTGAGCTTCTCGATCTTGGGCTTGGTGATGTTAATTGTAAGAATCAAAGGGGATATAGTGTGCTTCATGTGGCTGCAATGAGGAAGGAGCCTAAGATTATAGTGTCCCTTCTGACAAAGGGAGCTCAGCCTTCTGATCTCACTTTGGATGGTAGGAAAGCCCTTCAAATTTCAAAACGCCTCACTAAGGCGGTGGATTATTATAGTGCTGAGGATGGAAAGGCATCTTCTAGGGACAGGTTGTGCATAGAGATACTAGAACAAGCTGAGAGAAGAGAGCCTTTACTTGGGGAGGCATCTTTTTCTCTTGCTATGGCAGGGGATGATTTGCGTATGAAAATGTTGTACCTGGAAAACAGAGTCGGACTGGCGAAGCTATTGTTTCCGATGGAAGCAAAAGTTGTGTTGGACATTACTCAAATTGATGGAACCTGTCCATTTTCAGAGATATCTCAAAATGTGGGTACTAAGAGGACAGCTGTGGATTTGAATGAGGCACCTTTCAAAATAAAGGAGGAACACCTAGCCAGGATGAGAGCACTCTCTAGATCTGTCGAATTAGGCAAACGATTCTTCCCACGATGTTCGGAAGTTCTGAACAAGATCATGGATACAAATAATCTATCACAGATTGCATGTCAGGGTAATGATACTCCAGAGGAGAGACAAGCCAAGAGAAGAAGGTACATGCAGCTGCAACAAGTTCTGAATAAAGCTTTCAATGAGGACAAGCAGGAGTTTGATAAGTCTGCAGTCTCATCATCATCTTCTTCAGCATCAATAGGAATGGTTATGAGGAATCCCATGAATGAACTTGATTCAACATTAAATGTATGTCTGAATAGAGAAAAATGA 1776 0.4217 MTMMESRITISDSNEISNNGSGICCLASSSQTHLTPEASPPLDIVALNRLSDNLGAIFEVSESEDFFADARIVLSDGREIPVHRCILAARSSFFKGVLCGKDQRNGVKLELKELAKDYEVGFDAILGVVSYLYSGKVRSSPKGVCVCVDDDCSHVGCRPAVEFMAELLYASSTFEISELRHLLQILDKVAADEILLVLSVANICGKSCEKLLARCAELIVKSDVDIISLEKALPQHIVKQIIDKRIELGSNKPKDICFPDKYVKRIHRALDSDDVELVRLLLREGHTNLDAAYALHYAVAYCDAKITTELLDLGLGDVNCKNQRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYSAEDGKASSRDRLCIEILEQAERREPLLGEASFSLAMAGDDLRMKMLYLENRVGLAKLLFPMEAKVVLDITQIDGTCPFSEISQNVGTKRTAVDLNEAPFKIKEEHLARMRALSRSVELGKRFFPRCSEVLNKIMDTNNLSQIACQGNDTPEERQAKRRRYMQLQQVLNKAFNEDKQEFDKSAVSSSSSSASIGMVMRNPMNELDSTLNVCLNREK 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1242 591 Gene3D Potassium Channel Kv1.1; Chain A 44 221 IPR011333 -
Mibi13g1242 591 SMART BTB_4 68 191 IPR000210 GO:0005515
Mibi13g1242 591 Coils Coil 529 549 - -
Mibi13g1242 591 SUPERFAMILY Ankyrin repeat 264 366 IPR036770 -
Mibi13g1242 591 SUPERFAMILY POZ domain 46 182 IPR011333 -
Mibi13g1242 591 CDD BTB_POZ_NPR_plant 48 186 - -
Mibi13g1242 591 Pfam Ankyrin repeats (3 copies) 267 351 IPR002110 GO:0005515
Mibi13g1242 591 ProSiteProfiles BTB domain profile. 68 141 IPR000210 GO:0005515
Mibi13g1242 591 Pfam NPR1/NIM1 like defence protein C terminal 366 565 IPR021094 -
Mibi13g1242 591 Gene3D - 236 468 IPR036770 -
Mibi13g1242 591 PANTHER REGULATORY PROTEIN NPR3 8 568 IPR044292 GO:0009862|GO:2000022|GO:2000031
Mibi13g1242 591 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Mibi13g1242 591 ProSiteProfiles Ankyrin repeat profile. 324 356 IPR002110 GO:0005515
Mibi13g1242 591 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 235 387 - -
Mibi13g1242 591 SMART ANK_2a 290 320 IPR002110 GO:0005515
Mibi13g1242 591 SMART ANK_2a 324 353 IPR002110 GO:0005515
Mibi13g1242 591 SMART ANK_2a 261 289 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1242 Mibi-ChrMibi13 17218294 17222206 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi13g1242 NPR1_like_C 2.9e-83 No_clan