Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1161 ATGGAGTGGGATAGCAATTCCGATCTCAGTGAGGATGAGGATGAGAGCTTCTTGCTTGATGATGATGAAGGCCATCTTCTTCCTTTCCCTGTTGGAAACTTGCTCCAAACGGCGCCCTGTGGGATTGTCGTCACCGATGCACTTGAACCAGACCATCCTATCATTTATGTCAATTCTGTTTTCGAGATGGTTACTGGGTATCGTGCAGAAGAAGTTCTTGGTCGCAACTGCCGATTCTTGCAGTGTCGAGGCCCTTTTGCTAAGAGAAGGCATACATTAGTGGACTCGGCAATAGTTTCAGAAATTAGGAGATGCCTTGAGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCCCCACTGATGAACAGATTGCGGTTGACACCTATATTTGGAGATGATGAGACTATAACACATGTCATTGGCATCCAGTTCTTCGCAGAGGCAAACATTGATCTTGGTCCTGTCCTAGGTTCAGCAATTAAGGAATCTGCCAAGCTATGTGATCATTTTCGTTCTTCCGCCCTTGCCTCATTACGTCCTCTCCCATCAGGGGACCGTAATGTTTCTCGTGGATTTTGTGGGATATTGCAGTTGAGTGATGAGGTATTGTCTCTCAAGATACTTTCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGCTCTGTATGTAGGCAATTGTATGAGCTAACAAGAAATGAAGATCTTTGGAGAATGGTGTGTCAAAACGCATGGGGAAGTGAAACTACTCGTGTTTTAGAGACCGTCCCTGCTGCAAGACGATTCGGATGGGGTAGGCTGGCTAGGGAATTGACAACTCTTGAAGCCGCAGCATGGAGAAAGTTGACTGTTGGGGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGGGTTGTGCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTCAATTCTAGTAATCCCGAGTGGCAACACGTGCAGGTAAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCACATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCCACTTGGCGTGAAATTTCTGGATTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCTGATTCTGGAGTTCTTTTGAGCGATACATTCCTCCTTGATCTGTCAATGGAGAATCCTATTTGGAGGGAGATACCAGTCGCATGGACCCCGCCTTCTCGTCTGGGCCACTCCCTGTCTGTATATGGTGGTAGGAAAATACTGATGTTCGGGGGTCTAGCCAAGAGTGGGCCATTGCGGTTTCGCTCTAGTGATGTATTCACAATGGATCTTAGTGAGGAGGAGCCATGTTGGAGATGTGTAACTGGAAGTGGAATGCCTGGTTCTGGGAATCCTGGGGGCATGGCTCCTCCTCCTAGACTTGATCATGTGGCTGTAAGTCTTCCCGGCGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCATTCTTCATCCCAGCTCTACATCCTGGACCCAACTGACGAGAAGCCTACTTGGAGAATCTTAAACGTACCAGGGCGCCCCCCGAGATTTGCTTGGGGACATAGCACCTGTGTTGTTGGAGGGACAAGAGCTATCGTATTGGGTGGTCAGACTGGAGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAATTCTGTGGTCTAA 1842 0.4783 MEWDSNSDLSEDEDESFLLDDDEGHLLPFPVGNLLQTAPCGIVVTDALEPDHPIIYVNSVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHTLVDSAIVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDETITHVIGIQFFAEANIDLGPVLGSAIKESAKLCDHFRSSALASLRPLPSGDRNVSRGFCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYELTRNEDLWRMVCQNAWGSETTRVLETVPAARRFGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMENPIWREIPVAWTPPSRLGHSLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPGGMAPPPRLDHVAVSLPGGRILIFGGSVAGLHSSSQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLANSVV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1161 613 SUPERFAMILY Kelch motif 444 607 IPR015915 GO:0005515
Mibi13g1161 613 Gene3D - 500 612 IPR015915 GO:0005515
Mibi13g1161 613 Gene3D - 274 499 IPR015915 GO:0005515
Mibi13g1161 613 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Mibi13g1161 613 FunFam Putative LOV domain-containing protein 274 478 - -
Mibi13g1161 613 Pfam Kelch motif 454 505 IPR011498 GO:0005515
Mibi13g1161 613 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Mibi13g1161 613 TIGRFAM sensory_box: PAS domain S-box protein 34 148 IPR000014 -
Mibi13g1161 613 Gene3D PAS domain 25 160 - -
Mibi13g1161 613 FunFam Putative LOV domain-containing protein 479 612 - -
Mibi13g1161 613 Gene3D - 198 245 - -
Mibi13g1161 613 SUPERFAMILY Kelch motif 283 499 IPR015915 GO:0005515
Mibi13g1161 613 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Mibi13g1161 613 CDD PAS 38 148 IPR000014 -
Mibi13g1161 613 FunFam Adagio protein 1 198 245 - -
Mibi13g1161 613 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 609 - -
Mibi13g1161 613 FunFam Adagio protein 1 29 160 - -
Mibi13g1161 613 Pfam F-box-like 209 247 IPR001810 GO:0005515
Mibi13g1161 613 Pfam Galactose oxidase, central domain 361 408 - -
Mibi13g1161 613 Pfam PAS domain 39 149 IPR000014 -
Mibi13g1161 613 SUPERFAMILY F-box domain 190 262 IPR036047 GO:0005515
Mibi13g1161 613 Pfam Galactose oxidase, central domain 297 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1161 Mibi-ChrMibi13 15323176 15328771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1161 31 191 AGC Kinase Gene Family AT5G58140 29.448 3.26e-14 74.3