Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1153 ATGGCGTTCAAGGCTATACCATCTGAGTTTGCCATCAAGTTCTTGTCTTCAAGAAAGAGTGGACAAATTACCAATCTTAGGACTTCAAATAGGAGGAGGGTTTGGGTTTCTAAGTTTGCCTCAAGGAAACGTGGGACAGGACCAATATTTGAACTCTCTCGTTGTGGGTGGAAGGAATTTGCGAAGGACAATGACTTGAAAGTAGATGATGTTTGTGTTTTTGAGCTCATCAAAGGAGCAATTCATCATGAACTCAATTTTCTGGTTTCAATCTTTCGAAATAAGAATCCTTCAGATGCTCATTTGTCTCAAGAAACAGGAAAACATACCCAGAAAAACAAGAGGGTGAAAATTAAAACAGAGGCCCATGAGTTTGAATATTCTCCAAAGAAGCCTAAATTTACAAAAGCTACTTCTTCTAGAGAAGCTGTTGTTCATAGTTTCAACTCAGAAAACCCCTTCTTCAAAGCAACCATAGGATTATCACATGGTCAGGCAATACCAGCTACTTTTGTAAGGAAGTATTGGAAACAAGGGAAACATGTTGTAAAGCTGCAGGTTAGGGATAGATCATGGAAGGTTAAGTTGATCAGATATTGTGGATCAAATTCACAGGATCATGGCTTCTTTTCAGGAGGATGGCCTGCATTTGTAAAAGAGAATGATCTGCAAGGAGGAGACGATTGCTTCTTTGAGCTTGTGCATAGGGATCACATTCATGTCATGAAAGTTTCCATCTTCAAACATTCCTCACCTTAA 759 0.3926 MAFKAIPSEFAIKFLSSRKSGQITNLRTSNRRRVWVSKFASRKRGTGPIFELSRCGWKEFAKDNDLKVDDVCVFELIKGAIHHELNFLVSIFRNKNPSDAHLSQETGKHTQKNKRVKIKTEAHEFEYSPKKPKFTKATSSREAVVHSFNSENPFFKATIGLSHGQAIPATFVRKYWKQGKHVVKLQVRDRSWKVKLIRYCGSNSQDHGFFSGGWPAFVKENDLQGGDDCFFELVHRDHIHVMKVSIFKHSSP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1153 252 SUPERFAMILY DNA-binding pseudobarrel domain 148 243 IPR015300 -
Mibi13g1153 252 Pfam B3 DNA binding domain 5 94 IPR003340 GO:0003677
Mibi13g1153 252 Pfam B3 DNA binding domain 162 249 IPR003340 GO:0003677
Mibi13g1153 252 SMART B3_2 2 95 IPR003340 GO:0003677
Mibi13g1153 252 SMART B3_2 154 250 IPR003340 GO:0003677
Mibi13g1153 252 Gene3D - 133 250 IPR015300 -
Mibi13g1153 252 Gene3D - 3 96 IPR015300 -
Mibi13g1153 252 SUPERFAMILY DNA-binding pseudobarrel domain 6 93 IPR015300 -
Mibi13g1153 252 CDD B3_DNA 6 93 IPR003340 GO:0003677
Mibi13g1153 252 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 103 249 IPR044837 -
Mibi13g1153 252 CDD B3_DNA 167 248 IPR003340 GO:0003677
Mibi13g1153 252 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Mibi13g1153 252 ProSiteProfiles B3 DNA-binding domain profile. 150 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1153 Mibi-ChrMibi13 15170079 15173115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1153 6 244 REM Transcription Factor Family AT4G31640 25.000 1.53e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi13g1153 B3 7.5e-13 CL0405