Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1149 ATGGCTTCCCAACAATATCAGCATTTGATAAAAACAAGCACACTCTTTTTCAAGCCCATTCACTCTAAGAGCCTCCCTGATAAGCTTATGATTCCTAGAAAGTTTGTGAAGATATATGGGGATGTCTTGTCTGACACAGTGATTTTGAAGCTTCCAAACGGTGAAGAATGGAAAGTAAAATTGGGAAGAAGAAATAATGGTGATGTTTGGTTTGAAAATGGATGGAAAGAATTTGCAGAGTATCATTCTCTCTTCAAGGGAAGATTATTAGTCTTTGGGTTTGACGGTTCCAATTCTCATCATTTAGGCGTTCTAATAATGGACCTCACAACTTCAGAAGAAATAGAATATCCTTCAAATCTTGGCGTTCAAGGTAAGAAACAAGAAGAATCACCATGTGGAACAAGAAAGAACAACCCATCATTATCTTGTCTCCATAAAAAACGTAAGGACGGAAATCTTAAGAGAGGCCATAATGTTGACACTAATTTGTGTACTCAAGATGCAGAATTGTATCACACCAGCAAAAAGTGCAAAGGTAGCCAACGAGGCAGGTTTAATTCTAAGGTCCTCGAAGTCAAAGGTGAAGCTGTTAATAACGAGAATATGGCAAGAGCACTTGCAAGAGCTAAAGCTTTCAAATCTCAATCTCAGTATCCTTCTTTCACATTTGTTGCTAGACCATCCTACATTAATACTTCTAGTCAAGTTGCTATACCATCCAAATTTGCCAGAAAGTTCTTGGCTTCAAAAAAGAGTGGACAAAGTACCAATCTTCGGACTTCAAATGGGAGGGTTTGGATCACTAAGTTCACTACAAGGAGACAGAACACAAGAACAAAATTTGAACTCTCTCATGCTGGGTGGAGGGCATTTGTGAAGGACAATGACTTGAAAGTAGACGATGTTTGTGTTTTTGAGCTCATAAAAGGAGCAACTCGTGAACTCAATTTTCTGGTTTCAATCTTTCGAAATTCAAATCCTTCAGATGCTCATTTGTCTCAAGCAATAGGAAAAAATACCCAGAAAAACAAGAGGGTGAAAATTAAAACAGAGGCCCAGGAGTTTGAAGTTTCTCCAAAGAAGCCCAAATTTACAAAAGCTACTTCTTCTAGAGAAGCTGCTGCTCATAGCTTCAACTCAAAAAACCCCTTCTTCAAAGTAACCATAGGATTATCCAGTGGTCAGGCAATACCAGTTACTTTTTTAAGGAAGTATTGGGAACAAGGGAAACATGTTGTAAAGCTGCAGATGATTCCTAGGAAATTTGCGAACAAATATACGGATGTCTTATCTCGCACAGTGATTTTGAAGCTTCCAAACGGTGAAGAATGGAAAGTAAATTTGGGAAGAAGAAATAACGGTGATGTTTGGTTTGAAAATGGATGGAGAGAATTTGCAGAGTTTCATTCTCTCTTAAAGGGAAGATTATTAGTGTTTGGGTATGACGATTCCAATCCTCATCATTTAAGCGTTCTAATAGTGGACCTCACAACTTCAGAGGAAATTGAATATCCTTCCAATTATGGCGTTCAAGCGGGTATAACGTTCTTTTCTATTAATTTTACAGCAGTTAGTGAACAAGTCAGGTTTAATTCCAAGATCCTTAAAGTCAAAGGTGAAGAAGATATTGAGGGGAACATAGCAAGAGCACTTAAAAGAGCTAAAGCTTTCAAATCTCAATCTCAATATCCTTCTTTCATGATTGTTGCTAGACCATCATACATTAATACTTCAAGTCAAGTGGCTATACCGTCTGAGTTTGCCATAAAGTTCTTGTCTTCAAGAAAGAGTGGACAAATTACCAATCTTAGGACTTCAAATGGGAGGAGGGTTTGGGTTTCTAATTTTGCCTCAAGGAAACAGGGGTCAAGAACAAGATTTGAACTCTCTCGTTGTGGGTGGAAGGAATTTGGGAAGGACAATGACTTGAAAGTAGATGATGTTTGTGTTTTTGAGCTCATCAAAGGAGCAATTCATCATGAACTCAATTTTTTGGTTTCAATCTTTCGAAATAAGAATCCTTCAGATGCTCATTTGTCTCAAGAAACAGGAAAACATACCCAGAAAAACAAGAGGGTGGAAATTAAAACAGAGGCACAGGAGTTTGAAGATTCTTCAGAGAAGCCCAAATTTACAAAAGCTACCTCTTATAGAGAAGCTGCTGCTCATAGTTTCAACACAGAAAACCCCTTCTTCAAAGTAACCATAGGAGTATCCCATGGTCAGGCAATACCAGCTACTTTTGTAAGGAAGTATTTGAAACAAGGGAAACATTTTGTAAAGCTGCAGGTTAGGGATAAATCATGGAGGGTTAAGTTGATCAGAAATTGTGGATCAAATTCACAGGATCATGGCTTCTTTTCAGGAGGATGGCCTGCATTTGTAAAAGAGAATGATCTGCAAGTAGGAGACTATTGCTTCTTTGAGCTTGTGGATAGGAATCATATTCATGTCATGAAAGTTTCCATCTTCAAACATTCCTCACCTTAA 2493 0.3803 MASQQYQHLIKTSTLFFKPIHSKSLPDKLMIPRKFVKIYGDVLSDTVILKLPNGEEWKVKLGRRNNGDVWFENGWKEFAEYHSLFKGRLLVFGFDGSNSHHLGVLIMDLTTSEEIEYPSNLGVQGKKQEESPCGTRKNNPSLSCLHKKRKDGNLKRGHNVDTNLCTQDAELYHTSKKCKGSQRGRFNSKVLEVKGEAVNNENMARALARAKAFKSQSQYPSFTFVARPSYINTSSQVAIPSKFARKFLASKKSGQSTNLRTSNGRVWITKFTTRRQNTRTKFELSHAGWRAFVKDNDLKVDDVCVFELIKGATRELNFLVSIFRNSNPSDAHLSQAIGKNTQKNKRVKIKTEAQEFEVSPKKPKFTKATSSREAAAHSFNSKNPFFKVTIGLSSGQAIPVTFLRKYWEQGKHVVKLQMIPRKFANKYTDVLSRTVILKLPNGEEWKVNLGRRNNGDVWFENGWREFAEFHSLLKGRLLVFGYDDSNPHHLSVLIVDLTTSEEIEYPSNYGVQAGITFFSINFTAVSEQVRFNSKILKVKGEEDIEGNIARALKRAKAFKSQSQYPSFMIVARPSYINTSSQVAIPSEFAIKFLSSRKSGQITNLRTSNGRRVWVSNFASRKQGSRTRFELSRCGWKEFGKDNDLKVDDVCVFELIKGAIHHELNFLVSIFRNKNPSDAHLSQETGKHTQKNKRVEIKTEAQEFEDSSEKPKFTKATSYREAAAHSFNTENPFFKVTIGVSHGQAIPATFVRKYLKQGKHFVKLQVRDKSWRVKLIRNCGSNSQDHGFFSGGWPAFVKENDLQVGDYCFFELVDRNHIHVMKVSIFKHSSP 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1149 830 SUPERFAMILY DNA-binding pseudobarrel domain 726 821 IPR015300 -
Mibi13g1149 830 CDD B3_DNA 15 106 IPR003340 GO:0003677
Mibi13g1149 830 CDD B3_DNA 732 826 IPR003340 GO:0003677
Mibi13g1149 830 ProSiteProfiles B3 DNA-binding domain profile. 567 673 IPR003340 GO:0003677
Mibi13g1149 830 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Mibi13g1149 830 SMART B3_2 732 828 IPR003340 GO:0003677
Mibi13g1149 830 SMART B3_2 16 108 IPR003340 GO:0003677
Mibi13g1149 830 SMART B3_2 224 326 IPR003340 GO:0003677
Mibi13g1149 830 SMART B3_2 567 673 IPR003340 GO:0003677
Mibi13g1149 830 SMART B3_2 413 498 IPR003340 GO:0003677
Mibi13g1149 830 SUPERFAMILY DNA-binding pseudobarrel domain 561 671 IPR015300 -
Mibi13g1149 830 Gene3D - 365 498 IPR015300 -
Mibi13g1149 830 Gene3D - 711 828 IPR015300 -
Mibi13g1149 830 Gene3D - 197 327 IPR015300 -
Mibi13g1149 830 Gene3D - 545 674 IPR015300 -
Mibi13g1149 830 ProSiteProfiles B3 DNA-binding domain profile. 222 326 IPR003340 GO:0003677
Mibi13g1149 830 MobiDBLite consensus disorder prediction 123 142 - -
Mibi13g1149 830 CDD B3_DNA 565 671 IPR003340 GO:0003677
Mibi13g1149 830 ProSiteProfiles B3 DNA-binding domain profile. 728 828 IPR003340 GO:0003677
Mibi13g1149 830 CDD B3_DNA 220 324 IPR003340 GO:0003677
Mibi13g1149 830 Pfam B3 DNA binding domain 24 104 IPR003340 GO:0003677
Mibi13g1149 830 Pfam B3 DNA binding domain 567 672 IPR003340 GO:0003677
Mibi13g1149 830 Pfam B3 DNA binding domain 416 495 IPR003340 GO:0003677
Mibi13g1149 830 Pfam B3 DNA binding domain 741 827 IPR003340 GO:0003677
Mibi13g1149 830 Pfam B3 DNA binding domain 225 325 IPR003340 GO:0003677
Mibi13g1149 830 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Mibi13g1149 830 CDD B3_DNA 418 496 IPR003340 GO:0003677
Mibi13g1149 830 ProSiteProfiles B3 DNA-binding domain profile. 402 496 IPR003340 GO:0003677
Mibi13g1149 830 Gene3D - 10 110 IPR015300 -
Mibi13g1149 830 SUPERFAMILY DNA-binding pseudobarrel domain 216 326 IPR015300 -
Mibi13g1149 830 SUPERFAMILY DNA-binding pseudobarrel domain 415 496 IPR015300 -
Mibi13g1149 830 PANTHER B3 DOMAIN-CONTAINING 217 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1149 Mibi-ChrMibi13 15129959 15137326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1149 680 826 B3 DNA Binding Superfamily AT3G18990 29.878 1.42e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi13g1149 B3 5.9e-13 CL0405