LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g1146	ATGGATTTGTCTTTACAAGGTGCCACAATCGATCCATCCAAATGCAGCAAGTTGAGTATGGAAGAAAAAAGAGAGCTTATATATGAGATATCTAAGTCCCGGGGTGCATCAGAGATGTTACAATCATGGAGCCGACAGGAGATTTTGAAAATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAGTACACTGGCTTGACAAAGCTGAAAATCATAGAAAATCTATTAAAAATTGTCTCCGAAAAGAAATCAGGAAACCAGGAAATTACAACAGATCTTGAACTACTTTCTCCTCCTGCAAATGAGCAGAAACCAGCTAAAAGGCAGAGAAAAACTGAGAATCCGTCTAGATTGCCTACTCCAGCAAGCTATGGTCTACTCTCTAATGGTGATGGGGATTTAGATAGTAGTAGCACTGCATACTGTAAAAATTCAGCTTGCAAAGCTACCATCAGGCAAGCAGATACATTTTGTAAAAGATGCTCGTGCTGCATTTGTCATCAATATGACGACAACAAAGATCCTAGCCTGTGGTTAATTTGTAACTCCGACCCTCCATTTCATGGTATTTCTTGTGGCTTGTCATGCCATCTTGAATGTGCTTTAAAACATGATGGTTCCGGGATCACCAAAAATGGAGTGCATCCCAAGCTTGATGGGAGTTCCTACTGTGTCTCATGTGGGAAAGTAAATGATTTGCTTGGATGTTGTAGAAAACAACTGTCAATGGCCAAGTGCACAAGACGTGTGGACATTCTCTGTTATCGCCTCTTCTTGACCCGAAAGCTGTTACAAGGGACTGAAAAGTATAAAAAACTTTATGAAGTAATTGATGAGGCTGTGAAGAAACTTGAACCTGAGGTTGGCCCATTAACAAGCTCACCAGTGAAGATTGGTAGGGGAATTGTGAACAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATTGCTGAATTCATCACTTTCTGAAATGCCCTTGCCTCCATCACCCAGTCTGACATATCAAGACACAAAATTGGTTGCTTCGGATATGGTGGGATTTGAAGGTGTATCTGCGACATCACTCACTGTAATTTTGGGTTCTGAAAATCCATATGGGGAAAATATTGTTGGTTACAGCTTATGGCATCGTGCGGCTCATGATGTGGACTATCCCGTGGACTCAACTTGCACATTGCATCTACCAGACAGAAGGTTCACTGTTAGGGATCTAATGCCAGCCACAGAATACATCTTCAAAGCTGTTGCATTCAATCACTCAAGGGACTTGAGCATGTGTGAAGTCCATGTTTTGACAGAGCAAGGTGAGGAAGAAGCACCTAACTGCTCCACAACAGAAAGAAGTCAGAGCCCTGTAACAAACTGTAGCGGCCTTTCCAATCCTTCTTCAGTAGAAGATGAAACTAACAATAGTAATCCATATTGTGACCAGAGCCATAACCGAGCGGAGAATCATCGTACTGATCAAAAGGACACCAACAAGCTTGCTTCAGGAATTTTATTCAATGACCCCACTAACCGCTCCAACATAGGTGAAGGTAGACTTCCAGCAGATTCTGATTCCTTATTGGATAAGGAACACGCTCTAGGAAAGACCGGGCCTTTACCTGATGAGCTGAAAGAAAAGCACTCACCAGAGGAGCAAGTCAACGAGGACGTGAGCACTGATAATGGGCCTGATTTGGCGGCTCAGGCTGCGAGGGACCATGTGTTATTAGCAGGTAGCTCAGAGGAAGGCCTTCCCATTACTCCATGCAAGTTGGAAATGCTTAAGGATGGGCCAGGAAGAAAGGGGAGGTCTAAATCCAAATCCAGTGGTAAGGCCAATAAGGATCAAGAAAAAGACACATCTGGAAAGAGAAAATGCCCTCATCAAGATGGAACCAAATCAAAGAAGAGAAATGAGGAAAGGCAACAAGAAGTTGAAGGGTGCGATGCAGATGGGTTTTCTTCTGATGGGGATTTTGAGTATTATGTGAAGGTGATTAGAAGGTTAGAGTGTGACGGACATATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTACAGCTTGAGAGCAACAGCCCAAGAAATAAGGGTTGTTAAAGTATATATTGATACCTTCATTGAAGATCCAACTTCTCTTGCTGAGCAGCTTGTGGACACCTTCTCAGATTGCGTATCATGCAAGAAAACATCTATGGTACCACCTGGTTTCTGCATGAAGCTTTGGCATTAA	2235	0.4291	MDLSLQGATIDPSKCSKLSMEEKRELIYEISKSRGASEMLQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGNQEITTDLELLSPPANEQKPAKRQRKTENPSRLPTPASYGLLSNGDGDLDSSSTAYCKNSACKATIRQADTFCKRCSCCICHQYDDNKDPSLWLICNSDPPFHGISCGLSCHLECALKHDGSGITKNGVHPKLDGSSYCVSCGKVNDLLGCCRKQLSMAKCTRRVDILCYRLFLTRKLLQGTEKYKKLYEVIDEAVKKLEPEVGPLTSSPVKIGRGIVNRLSSGPEVQKLCGSALELLNSSLSEMPLPPSPSLTYQDTKLVASDMVGFEGVSATSLTVILGSENPYGENIVGYSLWHRAAHDVDYPVDSTCTLHLPDRRFTVRDLMPATEYIFKAVAFNHSRDLSMCEVHVLTEQGEEEAPNCSTTERSQSPVTNCSGLSNPSSVEDETNNSNPYCDQSHNRAENHRTDQKDTNKLASGILFNDPTNRSNIGEGRLPADSDSLLDKEHALGKTGPLPDELKEKHSPEEQVNEDVSTDNGPDLAAQAARDHVLLAGSSEEGLPITPCKLEMLKDGPGRKGRSKSKSSGKANKDQEKDTSGKRKCPHQDGTKSKKRNEERQQEVEGCDADGFSSDGDFEYYVKVIRRLECDGHIEKNFRQKFLTWYSLRATAQEIRVVKVYIDTFIEDPTSLAEQLVDTFSDCVSCKKTSMVPPGFCMKLWH	744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	498	514	-	-
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	595	648	-	-
	Mibi13g1146	744	CDD	FN3	350	423	IPR003961	GO:0005515
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	441	565	-	-
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	442	483	-	-
	Mibi13g1146	744	SUPERFAMILY	Fibronectin type III	353	424	IPR036116	GO:0005515
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	523	555	-	-
	Mibi13g1146	744	Pfam	PHD - plant homeodomain finger protein	141	260	IPR032881	-
	Mibi13g1146	744	PANTHER	VIN3-LIKE PROTEIN 2-RELATED	8	744	IPR044514	GO:0010048\|GO:0040029
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	89	123	-	-
	Mibi13g1146	744	MobiDBLite	consensus disorder prediction	588	650	-	-
	Mibi13g1146	744	CDD	PHD_VIN3_plant	161	226	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g1146	Mibi-ChrMibi13	15097378	15101373	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g1146	1	601	PHD Gene Family	AT4G30200	48.265	8.43e-163	482