Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1145 ATGGATTCCTCTTCATCTTCTTCTTCATCCCCTAACTGGCTCGCCTTCTCTCTCTCCAACCCCTTATCTTCCTCTCTCTTCCCTCCCTCCTTCACCTCCCCCACCTCCACCCTCTCTCTCACAGGTAACACCACCACAGTCAATCCTCCTGTTGAAACCAAGGATGCTACAGTTGCTGTCACCGGGGCACCCACTAGTCTCTCCATGTTCACTGCTGTACCTAAGTTTGAAGACTTCCTCGGTGGAGCCCCCGCCGCCTCAGCCGCGGCGCCAACGGCTCACGCGCCTACACAGTTCGGTGCCGACAACGCGCTGAGCACAGTGGTGGAGAACGAGATATATGATTCAGAGCTGAAAACCATAGCCGCCAGCTTCCTTCGTGGCTTCTCTTCCGCCGCCGAGCCTCACCAGAAGCAGCCGCAGCTCATCCCCACCGAGCCGCCTCCTAAGAAGAGCGCCGACACCTTTGGCCAACGCACCTCCATCTACCGTGGCGTCACACGGCATAGATGGACGGGGAGATACGAGGCTCATCTGTGGGATAACAGTTGCAGGAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTCCCGAAGGAACTGGAAGATATGAAGAACATGACAAGGCAGGAGTTTGTTGCTTCTCTTCGAAGGAGGAGCAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGGGTCGCCGGAAACAAAGACCTCTATCTTGGCACTTTCAGTACACAAGAGGAAGCAGCAGAGGCGTATGACATAGCTGCCATAAAATTCAGAGGAATAAACGCAGTGACCAACTTTGACATGAGCCGTTATGACGTTAAGAGCATTGCCAATAGTAGCCTTCCCATCGGCGGACTCTCCGGCAAGAACAAGAACACGACGGATTCTCCTCCGTCCGACCACCACACCAATAAGAGCCCTGACCTTGGAGCCCGATCCTCGGCCGAAACTGACCGGGAACTATCCTCCGGCGGCAACTCCTCCGTCACCTTCGCATCCCAACCGCCGCCACCAAGCTCCAACAATTCTCTCACATTCGCCATACCCATCAAACAAGACACCACTTCAGATCATCATTATTGGTCCTCCGTTCTCGCTGGTTACAACAAAAACCCTACCTTGATCCAACAATCTTCTTCCACCAATGGCTCCGTGACATCTGTCCTACCCTTCAACGTAGAACTCTCTAGTACAAGCAGTGAAGGTGGAAACAACATCAACAATAATAATAATGGGATTTTCAATGGAGGAGGCATGTTCGTTCATCACCAACAACAACATAACAATAATAATAATGGTGGTGGCAATGGTTCTTCCTCTAGTTCAGGTTCAAGTTCATTGATGATCCCATTGGGCACGCCCATAGCTATAAATAGTAACCCTAGTTATGAGAACTCTTCTACTTATGGAAACTGGAGCATCATTGGCCCTACCCTCCACACCTTCCAAACTCATGCTACGAAACCCACTCTCTTTCAAACCCCAATTTTCGGCATGGAATAA 1644 0.5164 MDSSSSSSSSPNWLAFSLSNPLSSSLFPPSFTSPTSTLSLTGNTTTVNPPVETKDATVAVTGAPTSLSMFTAVPKFEDFLGGAPAASAAAPTAHAPTQFGADNALSTVVENEIYDSELKTIAASFLRGFSSAAEPHQKQPQLIPTEPPPKKSADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSGKNKNTTDSPPSDHHTNKSPDLGARSSAETDRELSSGGNSSVTFASQPPPPSSNNSLTFAIPIKQDTTSDHHYWSSVLAGYNKNPTLIQQSSSTNGSVTSVLPFNVELSSTSSEGGNNINNNNNGIFNGGGMFVHHQQQHNNNNNGGGNGSSSSSGSSSLMIPLGTPIAINSNPSYENSSTYGNWSIIGPTLHTFQTHATKPTLFQTPIFGME 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1145 547 Pfam AP2 domain 162 217 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 MobiDBLite consensus disorder prediction 30 50 - -
Mibi13g1145 547 CDD AP2 255 316 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 MobiDBLite consensus disorder prediction 363 392 - -
Mibi13g1145 547 ProSiteProfiles AP2/ERF domain profile. 256 314 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 SUPERFAMILY DNA-binding domain 255 316 IPR016177 GO:0003677
Mibi13g1145 547 SMART rav1_2 256 320 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 SMART rav1_2 162 231 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 SUPERFAMILY DNA-binding domain 161 226 IPR016177 GO:0003677
Mibi13g1145 547 MobiDBLite consensus disorder prediction 132 156 - -
Mibi13g1145 547 ProSiteProfiles AP2/ERF domain profile. 162 225 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 FunFam AP2-like ethylene-responsive transcription factor 255 316 - -
Mibi13g1145 547 Gene3D AP2/ERF domain 162 226 IPR036955 GO:0003700|GO:0006355
Mibi13g1145 547 Gene3D AP2/ERF domain 256 316 IPR036955 GO:0003700|GO:0006355
Mibi13g1145 547 MobiDBLite consensus disorder prediction 342 362 - -
Mibi13g1145 547 CDD AP2 161 225 IPR001471 GO:0003700|GO:0006355
Mibi13g1145 547 MobiDBLite consensus disorder prediction 462 492 - -
Mibi13g1145 547 FunFam AP2-like ethylene-responsive transcription factor ANT 161 227 - -
Mibi13g1145 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 416 - -
Mibi13g1145 547 MobiDBLite consensus disorder prediction 329 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1145 Mibi-ChrMibi13 15072318 15075498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1145 80 547 AP2-EREBP Transcription Factor Family AT5G57390 50.303 1.47e-136 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mibi13g1145 AP2 1.1e-09 CL0081