Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1113 ATGAAAGAAGAGAGTCCCAGCAACATAAACTTACCAAGCAATATAGGCAGTCCTGAAAGCCCAGCTTGCTTAAAACCATCATCATCATCAACAACAACGTCAACAAACAACAAAGAACAAGATCGCTTCCTTCCAATTGCAAATGTTGGGAGGATAATGAAGAAAGTGATGCCTGCAAATGGGAAAATCTCAAAGGATGCAAAAGAAACCGTTCAAGAATGTGTTTCCGAGTTCATCAGCTTCGTCACCGGTGAGGCCTCTGATAAGTGCCAAAGAGAAAAGAGAAAGACCATTAATGGTGATGATATTATATGGGCAATAACAACACTTGGCTTTGATGACTACGTTGATCCTTTGAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAATGTTCCCAAACAACAGCAGCAGCAGCAACAAAGCAGGCTACACCATCATCAACAACACAATAATAATATTCCTAATATTATTAATAATAACCTGCCTTTAAGTAATAGTATATATTCTTCAAACCCTTTCATTTCTCATCATCAGCCTCTTCCTCATCCTCATCCTCCTTATGTGACATCGGATCAGACATTTTCCTTACGTAATTTCTCATCAAACTCTATTCAGAAACAGTTACAGCCCCAAGACCATATGGATTCAATGGGGCAATGGTAA 678 0.3864 MKEESPSNINLPSNIGSPESPACLKPSSSSTTTSTNNKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFDDYVDPLKSYLQKYREIEGEKLNVPKQQQQQQQSRLHHHQQHNNNIPNIINNNLPLSNSIYSSNPFISHHQPLPHPHPPYVTSDQTFSLRNFSSNSIQKQLQPQDHMDSMGQW 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1113 225 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mibi13g1113 225 MobiDBLite consensus disorder prediction 1 40 - -
Mibi13g1113 225 MobiDBLite consensus disorder prediction 137 163 - -
Mibi13g1113 225 SUPERFAMILY Histone-fold 40 154 IPR009072 GO:0046982
Mibi13g1113 225 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Mibi13g1113 225 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Mibi13g1113 225 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Mibi13g1113 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi13g1113 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Mibi13g1113 225 Gene3D Histone, subunit A 30 160 IPR009072 GO:0046982
Mibi13g1113 225 FunFam Nuclear transcription factor Y subunit B-3 32 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1113 Mibi-ChrMibi13 14716003 14716680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1113 26 218 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.646 1.17e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi13g1113 CBFD_NFYB_HMF 3.3e-27 CL0012