Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi13g1079 | ATGCCCTCAAGATCTTGCCTAGACTTGTTAAATTTAGTCTCTCTTGATGATTATCGAACTTTGAGTCGGACCCCAAATGAAAAAATGTCACTCCCCGGAGTTTCCCCAAAATTTGAACTCCATCCCAACATGGGTCCCGACGAAATTGTCTCCCCTGTTCCCCAAGAACGAAGAATCATCGTCGCTAATCAGTTACCCATTAAATCATCTCGTGACAGCGAGACAAGGAAATGGAGTTTCGAATTTGATACTGATAGTCTTTATCTCCAGCTTAAAGATGGGTTTCCTTCTGATGTCGAGGTAATCTATGTGGGTTGTTTAAAAGCTGAAATCGAAACATCGGAACAAGAAGAGGTTTCGCAAATATTGCTTGAGAAGTTTCGATGTGTGCCGGCTTTTTTACCTGCTGAGATTCAGAACAAATTCTACCATGGATTTTGTAAGCATTATCTATGGCCTCTGTTTCACTACATGCTTCCTATGTCACCGAGTCATGGCGCACGTTTTGAACGATCCCAGTGGAAATCTTATGTTTATGCCAACAAGATTTTCGCTGATAAGGTGACGGAAGTGATAAACCCAGAGGAGGATTACGTTTGGATTCATGATTATCATCTCATGATCTTGCCTACCATTTTGAGAAGACGGTTTCATAGGGTCAAGCTTGGTTTTTTCCTTCATAGCCCATTTCCTTCCTCTGAGATTTACAGAACAATCCCAGTTCGTGATGAGATCCTTCGTGCTCTGTTGAATTGCGATTTGGTCGGTTTCCATACTTTTGATTACGCCAGGCATTTCTTGTCTTGTTGTAGTAGAATGCTGGGTTTGGATTATGAGTCCAAAAGGGGTTACATTGGGTTAGATTATTACGGCCGTACGGTTACAATCAAGATCTTGCCCGTGGGGATTCACATGGGACAGCTGAAATCGCTTTTGTCTTTGTCTAATACTGGCGATAGGATTGGGGAATTGAAGAAACAATATGAGGGGAAGATTGTTATTTTGGGTGTGGATGATATGGATATGTTCAAAGGTTTGAGCTTGAAGTTACTTGCAATGGGACAACTCTTGGATGTTCATGAAGATTTAAGGGGTAAGGTTGTTTTAGTTCAGATTCTGAATCCAGCTAGAAGCAGAGGAAGAGATATCCAAGATGTTCAGAATGAAACGAATTCTATAGCCAACGAGATCAATGAGAAATATGGTGAACCTGGGTATCAACCAATTGTGTTCATCAATGGACCCGTTTCTACACAAGAGAAAGCATCATATTATGCCATTTCTGAATGCTGTATTGTGAATGCTGTGAGGGATGGTATGAATTTAGTGCCTTATAAGTACACTGTTTGTAGGCAGGGGATCGATGAGGTGAATGACGATTCGAATTCGACGAGTGCTAAACGAAGCGTGATCATCGTGTCCGAGTTCATTGGTTGTTCTCCGTCGTTAAGTGGGGCTATCAGAGTGAACCCGTGGAACATCGACGACGTGGCGGAGGCGATGAATTCGGCGATTTCGATGTCAGAGGCGGAGAAACGATTGCGCCATGAGAAGCATTATAAGTACATAAGCTCACATGATGTAGCCTATTGGGCTAGGAGTTTTGATCAGGATTTAGAGAGGGCTTGTAGGGAGCATTATCATAAGAGGTGTTGGGGTTTTGGGTTTGGCCTTGGTTTTAGAGTTGTTGCTCTTGATCCTACTTTCAGGAAGCTAACAGAAGAAAGAATTGTTTCTGCATATAGAAATACACAGAGCAGGTTGATTCTTTTAGACTATGATGGTACTATGATGCCACAAATATCAGTTGATAAAACCCCAAGTGAAGAGGTTATTTCTGTTTTGAATCTTTTATGTAGTGATCCTAGAAATGTAGTGTTTATAGTTAGTGGGAGAGATAAGGATTGCCTCAGCAAGTGGTTTTCTCCATGCCAGAAGCTAGGCCTCTCAGCAGAACATGGCTTCTTCACCAGGTGGGATTGTGATGGTTCATGGGAAACACGTGAGTTAGGCATGGATTTTGAATGGAAAAAGGTTGTGGAACCGGTTATGGCACATTATACAGAAGCAACTGATGGTTCTTTCATTGAAACAAAGGAGAGTGCTCTGGTTTGGCATCACCAAGAAGCTGACCCACATTTCGGATCATGCCAAGAGAAAGAGCTTCTTGATCACCTCGAAAATGTGCTAGCCAATGAACCAGTAGTAGTAAAAAGAGGACAACACATAGTTGAAGTAAAACCTCAGGGTGTGAGCAAAGGAATAGTGGTGGAGAATCTAATCTCAACGATGGTGAGTAATGGAAAGGCACCCGATTTTCTTTTGTGTATAGGAGATGACAGGTCAGACGAAGATATGTTTGAGAGTATTGCCCGTTCTGCTTCTGATCCAACCTTACAAGCCATATCACATGTTTATGCCTGCACTGTGGGTCAAAAGCCAAGCATGGCAAAATATTATCTGGATGATACTGTTGAAGTCATTAAGTTACTTGAAGGATTAGCCTCTGCAACATCATCTTCTTCATTTCCATCATCATCACCCACTGAGTTCTCACACTCTCATGATGATCTTGATATATAA | 2583 | 0.4193 | MPSRSCLDLLNLVSLDDYRTLSRTPNEKMSLPGVSPKFELHPNMGPDEIVSPVPQERRIIVANQLPIKSSRDSETRKWSFEFDTDSLYLQLKDGFPSDVEVIYVGCLKAEIETSEQEEVSQILLEKFRCVPAFLPAEIQNKFYHGFCKHYLWPLFHYMLPMSPSHGARFERSQWKSYVYANKIFADKVTEVINPEEDYVWIHDYHLMILPTILRRRFHRVKLGFFLHSPFPSSEIYRTIPVRDEILRALLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLKSLLSLSNTGDRIGELKKQYEGKIVILGVDDMDMFKGLSLKLLAMGQLLDVHEDLRGKVVLVQILNPARSRGRDIQDVQNETNSIANEINEKYGEPGYQPIVFINGPVSTQEKASYYAISECCIVNAVRDGMNLVPYKYTVCRQGIDEVNDDSNSTSAKRSVIIVSEFIGCSPSLSGAIRVNPWNIDDVAEAMNSAISMSEAEKRLRHEKHYKYISSHDVAYWARSFDQDLERACREHYHKRCWGFGFGLGFRVVALDPTFRKLTEERIVSAYRNTQSRLILLDYDGTMMPQISVDKTPSEEVISVLNLLCSDPRNVVFIVSGRDKDCLSKWFSPCQKLGLSAEHGFFTRWDCDGSWETRELGMDFEWKKVVEPVMAHYTEATDGSFIETKESALVWHHQEADPHFGSCQEKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVENLISTMVSNGKAPDFLLCIGDDRSDEDMFESIARSASDPTLQAISHVYACTVGQKPSMAKYYLDDTVEVIKLLEGLASATSSSSFPSSSPTEFSHSHDDLDI | 860 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi13g1079 | 860 | MobiDBLite | consensus disorder prediction | 838 | 860 | - | - | |
| Mibi13g1079 | 860 | Gene3D | - | 586 | 702 | IPR023214 | - | |
| Mibi13g1079 | 860 | Gene3D | - | 717 | 845 | IPR023214 | - | |
| Mibi13g1079 | 860 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 52 | 836 | IPR001830 | GO:0003824|GO:0005992 | |
| Mibi13g1079 | 860 | CDD | GT20_TPS | 57 | 540 | IPR001830 | GO:0003824|GO:0005992 | |
| Mibi13g1079 | 860 | TIGRFAM | T6PP: trehalose-phosphatase | 586 | 835 | IPR003337 | GO:0003824|GO:0005992 | |
| Mibi13g1079 | 860 | Pfam | Glycosyltransferase family 20 | 57 | 540 | IPR001830 | GO:0003824|GO:0005992 | |
| Mibi13g1079 | 860 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 716 | 847 | - | - | |
| Mibi13g1079 | 860 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 588 | 789 | IPR006379 | - | |
| Mibi13g1079 | 860 | Pfam | Trehalose-phosphatase | 590 | 823 | IPR003337 | GO:0003824|GO:0005992 | |
| Mibi13g1079 | 860 | SUPERFAMILY | HAD-like | 587 | 834 | IPR036412 | - | |
| Mibi13g1079 | 860 | CDD | HAD_TPP | 588 | 829 | - | - | |
| Mibi13g1079 | 860 | Gene3D | Glycogen Phosphorylase B; | 51 | 315 | - | - | |
| Mibi13g1079 | 860 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 57 | 544 | - | - | |
| Mibi13g1079 | 860 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 586 | 703 | - | - | |
| Mibi13g1079 | 860 | Gene3D | Glycogen Phosphorylase B; | 316 | 525 | - | - | |
| Mibi13g1079 | 860 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 311 | 524 | - | - | |
| Mibi13g1079 | 860 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 50 | 309 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi13g1079 | Mibi-ChrMibi13 | 13811522 | 13814428 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi13g1079 | 1 | 841 | Trehalose Biosynthesis Gene Families | AT2G18700 | 67.651 | 0.0 | 1198 |