Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1076 ATGGGCAGAACCAGAGCCTTATCAGAACTCAAAGGAGCAAACTTTTTGTCTCCCCCACCACAACCATACTTACCTTCCCCTCCTAACAACAACCTTACCGTCGGATCTGATGATTCCAATGTAAAGGACAGCGTAAGCCCAAGTGTACTCCTCATAATCATCATCCTCGCCATCATCTTCTTCCTCTCTGGTTTACTCCACCTTCTTGTTCGCTATCTATGGCGGCCACAAACCAGAGACCCAGATGAATTAGACGATGTTACTGTCCTTCAAGGACAGCTTCAACAACTTTTTCACCTCCATGATTCTGGGGTTGACCAATCTTTCATCGACACCCTCCCTGTTTTTGTTTACAACTCCATCATTGGACTCAAAACCAAACCTTTCGATTGCGCCGTTTGTTTGTCTGAATTCGAGCCGGAAGACAAGCTGAGATTGCTGCCCAAATGTAGCCACGCGTTCCACATGGGATGTATCGACACGTGGCTCTTGTCTCACTCCACTTGCCCGATTTGTCGAGCTTGCTTGCTCAATGATGTCCCCTACAGTTCCCCCATTGTTCTTGTCCTTGAATCAGGGAGTGACAACAATTCCAGAGAAATCGACCCGGAAATAGATGAAAGTGGATCCGGGTCGACCCGGTTTGACCCGTACCATGATGATTCAGGTGAAGTTGTCACTGTGAAGCTGGGGAAGATCAGGAATGTGGATGATGATAAGAACAATGGTGAAGGGAGTAGCAGAATTGGGGATGGTAGTATTAATGGGGAAGCAAGGAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTGATGGATGAGAGTACGTTACTTCATGTACCAATTAGAGCACAAATCAAGAAGAAGCAGAGGAATGCTTTGCTTTTGACTACAGGAAACAGGCTTGCAATGTCGGAGTGTGACTTTGAATCTAGGAGGGATTTCAGGTTCTGTGATTTGGATGGGAAAAGGGTTGAAGGGGAAGGGGAAGGGACTGGGAAAGTTTCAAGCTTTGGGGTTATTACCAGAAAGGAGAGCTTGTCGGTGTCAAAGATTTGGCTTAGGGAGAAGAAAGAGAAGAGGAGAATTGGGTTTGAGGATTCTACAAGGAGGGCTGTGTCATTTAGGTTTCCATTGCATAGAAATGTAGAAGAAGAAGATGGTGATGGCTTGAAGGAGAGGAATGGGAAATTGGGATCAAGGAGTACGATTTCTGAGATGGATATTACAAAATGGGAAGACAATGGAGGAGGAAGTGAATTTGGGTATGATGATGAAAACCAGAGTTGTTACAGTGTGGATTCATGGCAGGCAAATAGTAGAGCTCCTTCATTTGCAAGAAGAACTCTGCTTTGGCTTACAGGAAAACAGAACAAGGTTGTTCATTCATCCTCTGTTTCTGGGGATATGTAG 1410 0.4518 MGRTRALSELKGANFLSPPPQPYLPSPPNNNLTVGSDDSNVKDSVSPSVLLIIIILAIIFFLSGLLHLLVRYLWRPQTRDPDELDDVTVLQGQLQQLFHLHDSGVDQSFIDTLPVFVYNSIIGLKTKPFDCAVCLSEFEPEDKLRLLPKCSHAFHMGCIDTWLLSHSTCPICRACLLNDVPYSSPIVLVLESGSDNNSREIDPEIDESGSGSTRFDPYHDDSGEVVTVKLGKIRNVDDDKNNGEGSSRIGDGSINGEARRCFSMGSFAYVMDESTLLHVPIRAQIKKKQRNALLLTTGNRLAMSECDFESRRDFRFCDLDGKRVEGEGEGTGKVSSFGVITRKESLSVSKIWLREKKEKRRIGFEDSTRRAVSFRFPLHRNVEEEDGDGLKERNGKLGSRSTISEMDITKWEDNGGGSEFGYDDENQSCYSVDSWQANSRAPSFARRTLLWLTGKQNKVVHSSSVSGDM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1076 469 MobiDBLite consensus disorder prediction 12 38 - -
Mibi13g1076 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Mibi13g1076 469 MobiDBLite consensus disorder prediction 195 216 - -
Mibi13g1076 469 Pfam Ring finger domain 130 173 IPR001841 -
Mibi13g1076 469 MobiDBLite consensus disorder prediction 197 216 - -
Mibi13g1076 469 SMART ring_2 131 172 IPR001841 -
Mibi13g1076 469 CDD RING-H2_PA-TM-RING 130 173 - -
Mibi13g1076 469 FunFam E3 ubiquitin-protein ligase ATL6 93 179 - -
Mibi13g1076 469 SUPERFAMILY RING/U-box 109 181 - -
Mibi13g1076 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 352 - -
Mibi13g1076 469 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1076 Mibi-ChrMibi13 13744183 13745592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1076 39 464 C3H Transcription Factor Family AT2G18650 42.950 1.06e-83 262