Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1061 ATGGCTCTTCCTTGGGTTTATCTCCTCTTCTTTCTCTCTTGTTCTGCTCTCTGTCTCTCTTACGAGCCTCGTAACCATGAAGTTGAGGCTTTGATAAGTATAAGAGCATCTCTGAATGATCCTCATGGAGTATTAAGCAACTGGGATGAGAACTCAGTAGACCCTTGTAGCTGGGCTATGATCACTTGCTCTTCTGATGCACTTGTTATAGGCTTGGGAGCTCCAAGCCAATCTCTTTCTGGAACTTTATCAGCTGCCATAGGAAATCTGACAAATCTTCGACAAGTGTTACTGCAGAACAACAATATATCTGGCCTAATCCCACCGGAACTTGGCTCCCTTCCTAAGCTACAGACTTTAGATCTTTCTAATAATCGATTCTCTGGTGTGATTCCCAGTTCCTTAAGTCACTTGGATAATCTTAAGTACTTGAGACTGAACAACAATAGCTTGATCGGGCCCTTTCCTGTGTCACTAGCCAAAATCCCTCAACTTGCTTTCTTAGACTTGTCTTATAACAATCTTAGTGGACCTGTTCCCAAGTTTCCAGCTCGATCTCTCAATGTTGTGGGAAACCCATTAATTTGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGAGCAACAACCCTCTTGCCTGTTTCATTTTCTCTTCCGTCTTCACAAGGAAAGCATCAGTCCAAGAAAATAGCGATTGCACTCGGGGTCAGCCTTGGTTTTGCTAGTCTCATACTGCTGTCTTTAGGGCTTTTCTGGTATAGAAAGAAAAGACAGCAAGGGTCGCTTTTGTATATCAGTGATTATCAGGAAGATGGACTTGTTCGCTTGGGGAATCTCAATATTTTCACTTTCAGACAGCTCCAACATGCAACAGAAAATTTCAGCTCTAAGAACATACTTGGTGCTGGGGGTTTTGGCAATGTGTATAGAGGTAAGCTCGGAGATGGGACACTGGTTGCTGTGAAGAGGTTGAAGGATGTCACTGGAAGTGCTGGGGAATCACAGTTTCGAACTGAATTGGAAATGATCAGCTTGGCAGTTCACCGCAATTTGCTTCGCTTAATTGGATATTGCGCTACTCCTAATGAGAAGCTTCTGGTTTATCCTTACATGTCCAATGGAAGTGTGGCATCCAGACTTAGAGGTAAGCCTGCTCTTGATTGGAACACAAGAAAGAGGATAGCGATTGGAGCTGCGAGAGGTCTTCTGTATCTACATGAGCAGTGTGATCCAAAGATAATACATAGAGATGTTAAGGCTGCTAATGTGCTTCTGGATGAGTACTATGAAGCCATTGTTGGTGATTTTGGCCTTGCTAAGCTCCTTGATCATGCTGACTCTCATGTCACCACCGCTGTCCGAGGCACCGTAGGCCACATCGCACCAGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACCGATGTATTTGGATTTGGCATCCTCTTGTTGGAGCTCATAACTGGAATGACTGCTCTGGAGTTTGGAAAAACGGTGAATCAGAAAGGTGCAATGCTAGAGTGGGTGAAGAAAATACAGCAAGAAAAGAAGGTGGAACTGTTAGTGGACAAAGAGTTAGTAAGGAGTTATGATAGGATAGAGGTGGGGGAGATGTTGCAAGTAGCTATACTTTGCACTCAGAATCTACCGGCCCACCGCCCCAAAATGTCAGAAGTGGTCCGAATGCTAGAAGGCGATGGCCTGGCCGACAAGTGGGCAGCTTCACAGAATCATAATAATCTCAACATGAACAACTCTTTCCACAGCCACAGTAACAACAGTAGTTCATCTTCTCGCCCAAGCACCACCCTTGCTTCAAAAGATGATACTGATAATAATAATGCTCATGATCGTCCCAGCATGTTTGGCATGGGACTGGATGGTGATGATGATGATGAACATTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGGTAA 1941 0.4462 MALPWVYLLFFLSCSALCLSYEPRNHEVEALISIRASLNDPHGVLSNWDENSVDPCSWAMITCSSDALVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGLIPPELGSLPKLQTLDLSNNRFSGVIPSSLSHLDNLKYLRLNNNSLIGPFPVSLAKIPQLAFLDLSYNNLSGPVPKFPARSLNVVGNPLICGSSSTEGCSGATTLLPVSFSLPSSQGKHQSKKIAIALGVSLGFASLILLSLGLFWYRKKRQQGSLLYISDYQEDGLVRLGNLNIFTFRQLQHATENFSSKNILGAGGFGNVYRGKLGDGTLVAVKRLKDVTGSAGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVKKIQQEKKVELLVDKELVRSYDRIEVGEMLQVAILCTQNLPAHRPKMSEVVRMLEGDGLADKWAASQNHNNLNMNNSFHSHSNNSSSSSRPSTTLASKDDTDNNNAHDRPSMFGMGLDGDDDDEHSLDSYAMELSGPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1061 646 Gene3D Transferase(Phosphotransferase) domain 1 370 582 - -
Mibi13g1061 646 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Mibi13g1061 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Mibi13g1061 646 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Mibi13g1061 646 PRINTS Leucine-rich repeat signature 162 175 - -
Mibi13g1061 646 PRINTS Leucine-rich repeat signature 117 130 - -
Mibi13g1061 646 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Mibi13g1061 646 SMART serkin_6 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1061 646 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Mibi13g1061 646 SUPERFAMILY L domain-like 25 195 - -
Mibi13g1061 646 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Mibi13g1061 646 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Mibi13g1061 646 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Mibi13g1061 646 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Mibi13g1061 646 SMART LRR_typ_2 114 137 IPR003591 -
Mibi13g1061 646 SMART LRR_typ_2 90 113 IPR003591 -
Mibi13g1061 646 SMART LRR_typ_2 138 169 IPR003591 -
Mibi13g1061 646 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Mibi13g1061 646 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 573 - -
Mibi13g1061 646 MobiDBLite consensus disorder prediction 578 646 - -
Mibi13g1061 646 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1061 646 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672|GO:0006468
Mibi13g1061 646 MobiDBLite consensus disorder prediction 578 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1061 Mibi-ChrMibi13 13555272 13559715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1061 12 646 Receptor kinase-like Gene Family AT5G16000 63.411 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Mibi13g1061 PK_Tyr_Ser-Thr 6.9e-42 CL0016