Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1059 ATGCCAGATTTAGGAAGCTTATCGCTTTCAGAAGCTCTTGAGCTTCCTCACTGCCCTAATCTCAATGTCCCTGCCGAATCATCATCTGATATTTCCACTTCTTTGTACACAGTTCCTGTTAAATCCCTTGATTACCCTTACATTTCAAAACACAATCTTTTATTCCCTGTTTCTCAGCAGGATGGAAATGAATTCAGGGTTTCAAAGAGGAGCCGTTGTTCTTTGGATCGGGTCAATAAGCTAGCCAACGACAAGGGTTTAGAGGATCATGTGAGAGATTGTTCCGAGAAGAAGAAGATAGATTCTGGGTTTTGTAGGCTTAGCTGTACTCTTCCATTTCTTGTTGGTGCTCCGAAGATGGTTGAATGTCTTTTTTGTCATCATTTTGTCTACCCTGGGAACGAGGTTATATGTTCTGTTCGTGGCTGTGAAAGAGTCTACCATATGGAATGTGCAAAAGAAGCTGGTGGGATCGCGAATATCAAAAAATTCAAGTGTCCACAACATGCTTGCTTTATTTGCAAACAAAAGTTACACTTGCGGTGCGAGCGGTGCACAATGGCATTTCACACTAAATGCGCACCGTGGCCAGATAATATAGTGCTTTCAAAGGATCATCCTGGACGAGCTGTTTGTTGGAGACATCCTACTGACTGGCGGTTGGATGGAAAGCATGAAGCTTCAACAAGTAACATGGAGGAAGTGTTTTGTCGTTTGCCTACTCCTTATGTCAATGAGGAGTTCAAGATTGATTTCACGTGGAAAGACATGGAGAGTAAGCTTGAACCACCTCCATATGTACACATAAGACGCAATGTATACCTCGTAAAGAAGAAGCGCAGTGATTCAAATGATGGCGCAGGGTGCACCAGTTGCTCTTTCAATTCTACATGTTCTGATGATTGCGTGTGCAGAGTTCAATGCATAAGCTGCTCTAAGGCTTGTCGCTGCTCGGAAAATTGCAATAATCGGCCGTTTCGTAAGGATAAAAAGATGAAGATTGTCAAGACTCAACTTTGTGGTTGGGGAGTAGAAGCTGCTGAAACCATCAAAAAAGGAGAATTTGTAATTGAATATATTGGAGAAGTAATAAATGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAAAGGTGAACAGAATTTCTATATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGGAATACATCACGCTTTTTAAACCATAGCTGCGACCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGCGTGGGAGTCTTTGCCGCCCGCTCAATAGAAGTCGGAGAACCTTTAACATACGACTACAGATTTGTGCAATTTGGACCAGAGGTAAAATGCCACTGTGGTGCTCCAAATTGTCAAGGCTTTCTAGGGATCAAAAAGAAGATTGAGAAGGTGAATCTTTGCTGGGGCTCAAAACGGAAGAGAACAACATGTGTTACAGTGGGGACCAAAAGGGGAACTTCACCTACTTGCATTGCAATAATAACAGCTGTATGA 1533 0.422 MPDLGSLSLSEALELPHCPNLNVPAESSSDISTSLYTVPVKSLDYPYISKHNLLFPVSQQDGNEFRVSKRSRCSLDRVNKLANDKGLEDHVRDCSEKKKIDSGFCRLSCTLPFLVGAPKMVECLFCHHFVYPGNEVICSVRGCERVYHMECAKEAGGIANIKKFKCPQHACFICKQKLHLRCERCTMAFHTKCAPWPDNIVLSKDHPGRAVCWRHPTDWRLDGKHEASTSNMEEVFCRLPTPYVNEEFKIDFTWKDMESKLEPPPYVHIRRNVYLVKKKRSDSNDGAGCTSCSFNSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKDKKMKIVKTQLCGWGVEAAETIKKGEFVIEYIGEVINDALCEKRLWDMKYKGEQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGIKKKIEKVNLCWGSKRKRTTCVTVGTKRGTSPTCIAIITAV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1059 510 CDD SET_ASHR3-like 331 469 - -
Mibi13g1059 510 Pfam SET domain 341 446 IPR001214 GO:0005515
Mibi13g1059 510 FunFam Histone-lysine N-methyltransferase 243 480 - -
Mibi13g1059 510 PANTHER SET DOMAIN PROTEINS 77 489 - -
Mibi13g1059 510 ProSiteProfiles Post-SET domain profile. 453 469 IPR003616 -
Mibi13g1059 510 ProSiteProfiles SET domain profile. 330 447 IPR001214 GO:0005515
Mibi13g1059 510 SUPERFAMILY SET domain 250 459 IPR046341 -
Mibi13g1059 510 SMART PHD_3 171 216 IPR001965 -
Mibi13g1059 510 SMART PHD_3 122 170 IPR001965 -
Mibi13g1059 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 219 IPR013083 -
Mibi13g1059 510 Gene3D SET domain 243 488 IPR046341 -
Mibi13g1059 510 SMART PostSET_3 453 469 IPR003616 -
Mibi13g1059 510 ProSiteProfiles AWS domain profile. 285 330 IPR006560 GO:0005634|GO:0018024
Mibi13g1059 510 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 500 IPR025787 -
Mibi13g1059 510 SMART set_7 330 453 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1059 Mibi-ChrMibi13 13516256 13522115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1059 311 468 C2H2 Transcription Factor Family AT2G23740 35.754 1.53e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mibi13g1059 SET 3.2e-19 No_clan