Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g1046 ATGTTTCTGATTTTCTGTCTTGTCGTTTTTTGCTTTGGTGGTGGTGGGGTTTATGGTGGTGTGGAAGAAAATGCCCACCCAGTGAATGATGAAAGTTCACTGAGAAATTTCATGTCTGGAATTGTTTCAGACCCAGAAAACTCTCTTGCTACTTGGAGATCTTCTGGTGTTTCGTTTTGTAATTGGTCTGGAATTGTGTGTAACAATGTGAGTGGGAAAGTTATAGAGATTCATCTTAGAAGGAGGTCACTAAGGGGTACTATTTCCCCTGCTATTGGTAACCTCTCTGATTTGAAAATTCTTGATCTTTCTGAAAACTTTTTTGTGGGTCATATCCCAAAAGAGTTGGGGAATTTAGTTCAGCTTGAAAAACTCAGTTTGTATTGGAATCTTCTAGAAGGGAAGATCCCTTCAGAGATGGGTTTACTTCACAACTTACTCCACCTAGACATAGGAAGTAATAGGCTTGAGGGTGAGATTCCATCTTCATTGTTCTGTAATTTGTCATCCTCATTGACAGATTTAGACCTCTCAAACAATTCATTAGTTGGAGAAATACCCTTGAATAATGAGTGTGTGCTTTATGAGCTTGAGTATCTTTTAGTTTGGTCTAACCAGCTTGTGGGACAAGTTCCTCTAGCTCTTTCAAACTCCACTAAACTTGAATGGCTTGATTTGGGGTCAAACCGGTTTAGTGGTGAGCTACCTTCAAAGATTGTGGGTAATTGGCCAAATTTACAATACCTCTACTTATCCTCCAATGGCTTTGTTAGCCATGATGGTAATACCAATCTTGAACCATTCTTTGCTTCCTTAGTGAATTTGTCTAACCTTCAAGTTCTTGAATTAGATGGAAATCATCTTCAAGGGAAGATACCTCATATTGTTGGAGAACTTCCAACATCATTAATTCAGCTTCATCTTGAGGACAATCTCATATATGGTCCCATTCCCTCAGAAATTTCCAAACTTGTCAGCCTAACTCTATTGAACTTGTCAAGTAACCAACTAAAAGGTTCAATCCCTCCAAACCTATCCCTGATGAGAAAGCTTGAGAGAGTTTTTTTGTCCAATAATTCATTATCTGGTGAGATTCCTTCAACCATTGGTCAAATTCAACATCTGGGTCTGCTAGATTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGACAATTTTGCCAATCTTTCCCAGTTAAGAAGGCTTTTACTTTATGATAACCAGCTTTCTGGGACAATACCACCAAGCCTCGGAAAATGTGTCAATTTGGATATTTTAGACCTATCTCACAACAAGATTTCAGGGGTGATTCCTGCAGAAGTTGCAGTCTTATTTAACTTGAAATTGTACCTGAATTTGTCTAGCAACAACTTAGATGGGCCTCTGCCGATAGAGCTCAGCAAAATGGACATGGTTCTTGCTATTGATCTATCTATGAACAACCTCTCCGGTAGAATCCCACCACAGTTTGAAAGTTGCATAGCACTTGAGTACCTTAACTTTTCAAGTAATTCTTTAGAAGGCCCTCTTCCATATTCTTTAGGCCAACTGCCTTATATTCAAGCACTAGACGTGTCTTCAAATCGATTGACTGGGGAAATACCTCAATCCCTGCAGTTATCTTCTTCTCTTAAAGAACTCAATATCTCTTTCAATAAATTCTCAGGGAGCGTATCAATTGAGGGAGCATTTTCATCTCTCACCAAAGACTCTTTCCTAGGAAATGATGGCCTTTGTGGCTCAATAAAAGGCTTGCCTAGCTGCCATAAGAAACATAGCCAACATTTGATGCTCCTGTTAATTCTGGTACTACTCTTTGGCATCCCTATGTTCTGCATGCTTAGGCGCAATTCAGGGGTCAGAAAGAGACTAGCCATCGTTAGCATGGGAAACTTGGAGCGTGAAGAGGATGGAAAAGAGCTCAATTACCCAAAAATTTCACAAAAGCAACTTATTGAAGCCACTGGGGGCTTCAATGCTTCAAACTTGATTGGTTCAGGCCGGTTTGGAAAGGTCTATAAGGGAGTCCTCCAAGACAACACAAGAATAGCAGTGAAAGTATTAAACTCTACCACTGCTGATGATATTTCAGGGAGCTTTAAAAGGGAATTTCAGATCCTAAAGAAGACTAGGCACAGAAACTTAATAAGGATCATCAAAATTTGCAGTAAGCCAGATTTTAAGGCTCTTGTTCTTCCACTAATGCCAAATGGTAGCCTCGAGAGGCACCTATATCCAAGCAGTAGTTTGAGCCAGAGGTTGGATTTGGTTCAGTTAGTTAGGATTTGCAGTGATGTAGCTGAAGGAATTGCCTATCTCCACCATTACTCTCCAGTTAAAGTGGTTCATTGTGATCTTAAGCCAAGTAATATACTTCTTGATGATGATTTGACAGCTCTGGTGACAGATTTTGGAATTGCTAGGCTTGTTCAATGTGATGAAAGCAACCCCTCCAATAATTCAACATCTTTCAGTTCAACACAAGGCTTGCTAGTGGGCTCCATTGGCTACATAGCCCCTGAGTATGGAATGGGGAAACATGTCTCAACTAAAGGCGATGTTTACAGTTTTGGAGTAATTCTGCTAGAAATTGTGACAGGGAGGCCTCCCACAGATGTCCTTATCCATGAAGATTCTAGCTTGCATGAATGGGTAAAGAGACAGTATCCACACAAGCTTGAAGCCATTGTGAAACAAGCATTGGAAAGGTACTTTCCTTTAAGCCTCCGTCCAGTGCAACATATCAAAATCTGGCAAGATGTTATCATGGAGCTCATAGAGCTGGGCCTTCTTTGCACACAGAGCAATCCTTCAATCAGACCAAGCATGCTGGATGTAGCTCAAGAACTTGGGAGGTTAAAAGACTACTTGTCTAAGCCATTATTACTTCATAATATGATTGAAGAAGTCAATTGCAAGAATGATATGCTTTCTACTGTGAATATTACTTGA 2952 0.4007 MFLIFCLVVFCFGGGGVYGGVEENAHPVNDESSLRNFMSGIVSDPENSLATWRSSGVSFCNWSGIVCNNVSGKVIEIHLRRRSLRGTISPAIGNLSDLKILDLSENFFVGHIPKELGNLVQLEKLSLYWNLLEGKIPSEMGLLHNLLHLDIGSNRLEGEIPSSLFCNLSSSLTDLDLSNNSLVGEIPLNNECVLYELEYLLVWSNQLVGQVPLALSNSTKLEWLDLGSNRFSGELPSKIVGNWPNLQYLYLSSNGFVSHDGNTNLEPFFASLVNLSNLQVLELDGNHLQGKIPHIVGELPTSLIQLHLEDNLIYGPIPSEISKLVSLTLLNLSSNQLKGSIPPNLSLMRKLERVFLSNNSLSGEIPSTIGQIQHLGLLDLSRNKLSGSIPDNFANLSQLRRLLLYDNQLSGTIPPSLGKCVNLDILDLSHNKISGVIPAEVAVLFNLKLYLNLSSNNLDGPLPIELSKMDMVLAIDLSMNNLSGRIPPQFESCIALEYLNFSSNSLEGPLPYSLGQLPYIQALDVSSNRLTGEIPQSLQLSSSLKELNISFNKFSGSVSIEGAFSSLTKDSFLGNDGLCGSIKGLPSCHKKHSQHLMLLLILVLLFGIPMFCMLRRNSGVRKRLAIVSMGNLEREEDGKELNYPKISQKQLIEATGGFNASNLIGSGRFGKVYKGVLQDNTRIAVKVLNSTTADDISGSFKREFQILKKTRHRNLIRIIKICSKPDFKALVLPLMPNGSLERHLYPSSSLSQRLDLVQLVRICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDDLTALVTDFGIARLVQCDESNPSNNSTSFSSTQGLLVGSIGYIAPEYGMGKHVSTKGDVYSFGVILLEIVTGRPPTDVLIHEDSSLHEWVKRQYPHKLEAIVKQALERYFPLSLRPVQHIKIWQDVIMELIELGLLCTQSNPSIRPSMLDVAQELGRLKDYLSKPLLLHNMIEEVNCKNDMLSTVNIT 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g1046 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Mibi13g1046 983 Gene3D Ribonuclease Inhibitor 193 592 IPR032675 -
Mibi13g1046 983 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Mibi13g1046 983 SUPERFAMILY Protein kinase-like (PK-like) 642 950 IPR011009 -
Mibi13g1046 983 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Mibi13g1046 983 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Mibi13g1046 983 SUPERFAMILY L domain-like 271 570 - -
Mibi13g1046 983 FunFam Leucine-rich repeat receptor-like protein kinase TDR 272 590 - -
Mibi13g1046 983 FunFam Leucine-rich repeat family protein 29 191 - -
Mibi13g1046 983 Gene3D Transferase(Phosphotransferase) domain 1 735 964 - -
Mibi13g1046 983 ProSiteProfiles Protein kinase domain profile. 658 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1046 983 CDD STKc_IRAK 664 953 - -
Mibi13g1046 983 SMART LRR_typ_2 324 348 IPR003591 -
Mibi13g1046 983 SMART LRR_typ_2 275 299 IPR003591 -
Mibi13g1046 983 SMART LRR_typ_2 372 395 IPR003591 -
Mibi13g1046 983 SMART LRR_typ_2 143 167 IPR003591 -
Mibi13g1046 983 SMART LRR_typ_2 396 420 IPR003591 -
Mibi13g1046 983 SMART LRR_typ_2 95 119 IPR003591 -
Mibi13g1046 983 SUPERFAMILY L domain-like 32 259 - -
Mibi13g1046 983 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 735 961 - -
Mibi13g1046 983 Pfam Protein kinase domain 660 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1046 983 Gene3D Phosphorylase Kinase; domain 1 630 733 - -
Mibi13g1046 983 ProSiteProfiles Leucine-rich repeat profile. 326 348 IPR001611 GO:0005515
Mibi13g1046 983 SMART serkin_6 658 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi13g1046 983 PANTHER RECEPTOR-LIKE PROTEIN 55 303 952 - -
Mibi13g1046 983 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g1046 Mibi-ChrMibi13 13373684 13376974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g1046 30 886 Receptor kinase-like Gene Family AT5G20480 34.607 8.78e-148 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mibi13g1046 Pkinase 4e-45 CL0016