Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0860 ATGTCTGAGAATTTCGCTACGAGTTTTTCCGATCATCACTCTGGTTTTATGTTATCGCCGTTACCATTTGCGGCGGACGATGATTCCAATGGAAGGTGGCCGCAATTTCCGATGAACAATGAACTGTTTGATTCACATTCAACATTTGATCAGATTCCTCCTTTCAAGAGGCCAAGAGCATCATCTGAAATGAGTCACTTTGATCTGTCGCCATTTCAGCCGCCGCCGCCAAACATGAATCCTAGGATGCAAAACCCACAAAATCCTACGACAAACAACAGAGGAGGGACTAGCCACATTTTTTACAAGACTAGATTGTGTGCGAAATTCAGAATGGGTACATGTAGGAATGGAGAAAGTTGTAATTTTGCTCATGGCAATGAGGATGTGAGGCAGCCACCTGCAAATTGGCAGGAGCTTATTGGTTTACGTGATGAGGAAAGGTCAACTGGGAATTGGGATGATGATCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGAAAGATGCAATTTTCTTCATGAAGATCCGTCTAAGTTCAGAGATGATGCAGGGAGGTGTAGGGAGAGCTCAGCTATAAGCCTTGTGACTAATGGATCTCCAAAGTCACACTTGAATGGCACTAATAATGTAGAGAATAATAAGACTGTCAATAATGGGTGTGATGGCTTAAGAACAAATGGGAAGGCTTTCTGGAAGACCAAGTTATGTAGCAAGTGGGAGACAACAGGACAGTGCCCTTTTGGTGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGCCTAGTGGACGCAGTGAAGCAGAAGCTATGGGAGCTGCTTCATCAATTCCTGTGAATGATGTATCTCCTATCAATGCTGTAAGTATACTTGATTCAAAGGAAGATGAGCTGAAAAAGAAGAATTTGCTGAAGTGGAAAATAAACAAGAAGGTTAATAGAATTTATGGTGATTGGCTCGATGACTTTCCATTGCCAAGGTAG 1023 0.4194 MSENFATSFSDHHSGFMLSPLPFAADDDSNGRWPQFPMNNELFDSHSTFDQIPPFKRPRASSEMSHFDLSPFQPPPPNMNPRMQNPQNPTTNNRGGTSHIFYKTRLCAKFRMGTCRNGESCNFAHGNEDVRQPPANWQELIGLRDEERSTGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVTNGSPKSHLNGTNNVENNKTVNNGCDGLRTNGKAFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQVPSGRSEAEAMGAASSIPVNDVSPINAVSILDSKEDELKKKNLLKWKINKKVNRIYGDWLDDFPLPR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0860 340 MobiDBLite consensus disorder prediction 54 96 - -
Mibi13g0860 340 FunFam Zinc finger CCCH domain-containing protein 237 274 - -
Mibi13g0860 340 FunFam Zinc finger CCCH domain-containing protein 39 157 189 - -
Mibi13g0860 340 SUPERFAMILY CCCH zinc finger 160 187 IPR036855 GO:0046872
Mibi13g0860 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 269 IPR000571 GO:0046872
Mibi13g0860 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 162 185 IPR000571 GO:0046872
Mibi13g0860 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 126 IPR000571 GO:0046872
Mibi13g0860 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 189 IPR045877 GO:0003729
Mibi13g0860 340 SUPERFAMILY CCCH zinc finger 99 132 IPR036855 GO:0046872
Mibi13g0860 340 Gene3D - 157 193 - -
Mibi13g0860 340 Gene3D - 236 274 - -
Mibi13g0860 340 Gene3D - 96 132 - -
Mibi13g0860 340 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Mibi13g0860 340 FunFam Zinc finger CCCH domain-containing protein 96 132 - -
Mibi13g0860 340 SUPERFAMILY CCCH zinc finger 241 273 IPR036855 GO:0046872
Mibi13g0860 340 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Mibi13g0860 340 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Mibi13g0860 340 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Mibi13g0860 340 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Mibi13g0860 340 SMART c3hfinal6 160 187 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0860 Mibi-ChrMibi13 10933798 10935668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0860 240 273 C3H Transcription Factor Family AT1G68200 55.882 4.52e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi13g0860 zf-CCCH 2.1e-11 CL0537