LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi13g0796	ATGGAGTTTGTTCCGACGTCTCCGAATAAACGACTCAAAATCCAAGACCAGGACAATTCCGATCATAACCTCCATATCCTACCTTCACCTTCGTTCGACGATGATCAACCTGATTCTTGTGGAATTTGCTACGCCGACCATGGCACTTCAATCAGAGGTGAAATTGATTGTTGCGATCACTTTTTCTGCTTCGTCTGCATCATGGAATGGTCTAAGCATGAGTCTCGTTGCCCCCTCTGTCGTCAACGATTCTCCTCCGTTCGCCGCCCTCCTAAGCCCGGCGTCTTCCCTTCCTCCCGTCTCGTTAATGTCCCTATTCGCGACCAGGTTTACCATGTTCATGGGAATATCACAACAGGTCCTGCGGATCCTTATGCTGAAACTCGGTGTAGTGTATGTAACAGTGGGGAAGATGAAAGTTTTCTTCTGCTGTGTGATCTTTGTGATACTGCTTCTCATACATACTGTGTTGGCCTTGGACATGTTGTGCCTGAAGGTGATTGGTTTTGTCAAGATTGTGCTGTTTCCAGGGCAATTAATGACAATAACAATGTAGAGCATCAGTGTGATATACCAACAGCTGAGCCAAGTGTAACAATCCTTGATATTGTGAGAGAACCAAACAGCCAGATTGTCCAAAGAGCAAGACCTTCTCCTCTTGTTACTCCAGCTGTACCTGATAGGTTCAATAGAAACAAAGATAGGAATCATGACATAAGTGTTACCCCTGTACCTAATAGGGCCAATAGAAGCAAGGATAGAAATCGTGCCATAAGTGCTCGGACATTGCACCAATGTCGCAATGTGCAACGTAACATCCATGCTTTGCGTGAAAATTGGAATGCTTTGAGAAATGGCTCATTAAGGTTCCCTTCTTCTTCGTCTAGATGTGTTGTCAGACATGATAAACGACAGAACACTGATTCTCTACCACATGGAAAGTCAGATCAACTGCATTCTTCAGCTTCCACAAGCCTTCAGCAATCTATAATTCAAAGTGGCTCTTCTAACAACATAACGAATGAGAGAGGCTCAGAAGATGTCGACAAGGCTTGGAAAATGCTGGAGAGAGCAAGGAGAATGGAAAAGACTAATCATAAAAGCAGCATCCTTCCACAGGGATTGGATCACCATTTGAGAGTTGTAGGACCTAGAAAAGCACCAGTAAATCATTGTAATGATCAAGGACTGAAGATTCATCAACCTGGAAGGTCCATGGGAAATGAGAAGCGATACAGCTTTTCCAGCTTTAATAAGGATATGGACAATCCCCGGCCTATGGAGTTGGGAGGGAAAAAGGATAGTGGGATCACACATAAGGGGACAACACCAAATATCAGGGACCAAGCTCCTCATTTAGAAGAATGCTGTGAACCTTCATTGCCTCGAAAAGCATCGAGTAGCATTCGATGTGTTCCTCATCATGAAAATGGGGAGAGAAATGTTACTAAGGAACAAAGCAGGTCTTCCTGTTTTATAAATTCGGAGGGTTCTGCTCTTTTTGATGGCAAGATTGGAAGTGTGTCTTCCTCAAGCAGGGATGCAGGTGAAAAAAAGCGGTTGTCTAAAGATTTCGGGGATGCAAACATGCAAGAAAGTGAAAATGCTAAAAACGAGATCAAGTCTCTTGTCAAGCTCAACCTGAAAGTCCTCAGTAAAGATAGACGATTAGGCGTTGATTTATTCAAGAAAATTGCTAGGCACTCGACTCACTCTATCTTGGCTGCATGTCGATCGGAACACCAAAAGCTGGGCACAGGCTCCTCAAGCACTCTATGCAGTCATTGGGCTGATAATGAGCATTCTAACAAGTCCACCTTAATGCCTAATTGCTGCCGACAATGTTTTTACATGTTTGTAAGGAATGTGGTAAACTCCACTATGATGGGGAAGGTGGGTGGGGGTGCATCTTCATCCTCCTGA	1923	0.441	MEFVPTSPNKRLKIQDQDNSDHNLHILPSPSFDDDQPDSCGICYADHGTSIRGEIDCCDHFFCFVCIMEWSKHESRCPLCRQRFSSVRRPPKPGVFPSSRLVNVPIRDQVYHVHGNITTGPADPYAETRCSVCNSGEDESFLLLCDLCDTASHTYCVGLGHVVPEGDWFCQDCAVSRAINDNNNVEHQCDIPTAEPSVTILDIVREPNSQIVQRARPSPLVTPAVPDRFNRNKDRNHDISVTPVPNRANRSKDRNRAISARTLHQCRNVQRNIHALRENWNALRNGSLRFPSSSSRCVVRHDKRQNTDSLPHGKSDQLHSSASTSLQQSIIQSGSSNNITNERGSEDVDKAWKMLERARRMEKTNHKSSILPQGLDHHLRVVGPRKAPVNHCNDQGLKIHQPGRSMGNEKRYSFSSFNKDMDNPRPMELGGKKDSGITHKGTTPNIRDQAPHLEECCEPSLPRKASSSIRCVPHHENGERNVTKEQSRSSCFINSEGSALFDGKIGSVSSSSRDAGEKKRLSKDFGDANMQESENAKNEIKSLVKLNLKVLSKDRRLGVDLFKKIARHSTHSILAACRSEHQKLGTGSSSTLCSHWADNEHSNKSTLMPNCCRQCFYMFVRNVVNSTMMGKVGGGASSSS	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	291	345	-	-
	Mibi13g0796	640	ProSiteProfiles	Zinc finger RING-type profile.	40	81	IPR001841	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	504	533	-	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	224	257	-	-
	Mibi13g0796	640	Pfam	Ring finger domain	38	81	IPR001841	-
	Mibi13g0796	640	ProSiteProfiles	Zinc finger PHD-type profile.	127	176	IPR019787	-
	Mibi13g0796	640	PANTHER	F18C1.6 PROTEIN	35	631	-	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	311	342	-	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	417	447	-	-
	Mibi13g0796	640	ProSitePatterns	Zinc finger RING-type signature.	58	67	IPR017907	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	513	527	-	-
	Mibi13g0796	640	SMART	PHD_3	129	174	IPR001965	-
	Mibi13g0796	640	MobiDBLite	consensus disorder prediction	296	310	-	-
	Mibi13g0796	640	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	12	89	IPR013083	-
	Mibi13g0796	640	SUPERFAMILY	FYVE/PHD zinc finger	122	175	IPR011011	-
	Mibi13g0796	640	Pfam	PHD-finger	129	174	IPR019787	-
	Mibi13g0796	640	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	188	IPR013083	-
	Mibi13g0796	640	SUPERFAMILY	RING/U-box	32	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi13g0796	Mibi-ChrMibi13	10153087	10155641	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi13g0796	102	177	C2H2 Transcription Factor Family	AT3G01460	28.571	1.56e-09	59.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mibi13g0796		PHD	6.7e-10	CL0390