Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0789 ATGGGGAGGGGAAGAGTACAGCTGAAGAGAATAGAGAACAAGATCAACAGACAAGTGACTTTCTCCAAGAGAAGGTCAGGTTTGCAGAAGAAAGCACATGAGATCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCACTAAGGGCAAGCTCTCTCACTACTCTAGCGATCCCTGCATGGAAAAAATTCTTGAACGCTATGAAAGGTATTCTTATGCAGAAAGGCAGCTAGCTGCACCTGATCGTTCACCAAATGAAAACTGGACTCTAGAGCACTCAAAGATTAAGGCTAGAATGGAGGTCCTGCAAAGAAATCAAAAGCATTATATGGGGGAAGATCTAGGAGGCCTAAGTCTCAAAGAGCTTCAGAATTTGGAGCATCAACTAGATAGTTCTCTCAAACATATCAGAACGCGCAAGAACCAACTCATGTATGAATCCATTTCTGAGTATCAGAAAAAGGATAAGAAACTGCAGGAACAAAACAACTTATTGGTTAAAAAGATAAAGGAGAAAGAGAAGGCATTGACCCAACAGGCACGTGGGGAAAAGAAGAATGATGAAGCAAATGATGATGTCGTCATACATCCACAACTGCCGCCCTCCAATATTGGGGAGTCCGTAGGTGGTGGAGAAGATGACGAAGGAACCATGACTGAGGCTCGAGCTGGCCCCTTGCTTCCCTCTTGGATGCTTCCTCCCCGTCACTGA 720 0.4472 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLSHYSSDPCMEKILERYERYSYAERQLAAPDRSPNENWTLEHSKIKARMEVLQRNQKHYMGEDLGGLSLKELQNLEHQLDSSLKHIRTRKNQLMYESISEYQKKDKKLQEQNNLLVKKIKEKEKALTQQARGEKKNDEANDDVVIHPQLPPSNIGESVGGGEDDEGTMTEARAGPLLPSWMLPPRH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0789 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mibi13g0789 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Mibi13g0789 239 Coils Coil 151 189 - -
Mibi13g0789 239 MobiDBLite consensus disorder prediction 179 195 - -
Mibi13g0789 239 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Mibi13g0789 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 MobiDBLite consensus disorder prediction 179 239 - -
Mibi13g0789 239 Coils Coil 88 108 - -
Mibi13g0789 239 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mibi13g0789 239 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi13g0789 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi13g0789 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi13g0789 239 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0789 Mibi-ChrMibi13 10053093 10062304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0789 1 201 MADS-box Gene Family AT1G26310 65.196 1.14e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi13g0789 K-box 4.1e-29 No_clan