Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0788 ATGGGAAGAGGCAGGGTTGAGCTCAAGAGGATAGAGAACAAAATCAACAGGCAAGTTACGTTTGCCAAGAGAAGAAATGGACTTCTCAAGAAGGCTTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGAAAGCTCTATGAGTTCAGTAGTGGCTCCAGCATGATGAAAACACTGGACAAGTACCAGAAGTACAGCTATAGTGCACTGGAATCCAGCCAGCCAATGAGCGACACCCAGAGTAGCTATCAGGAATACTTGAGACTTAAAGCAAGGGTCGAAGTCCTGCAACGTTCTCAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAAGGAGCTGGAGCAGCTTGAGAATCAAGTTGAGGCATCCCTCAAGAATGTCAGATCCACTAAGACTCAGTATATGCTCGACCAGCTTGCTGATCTTCAAAACCGGGAGAAAATGCTGGAGGAAACTAATAGAGCATTGAGGAGTAAGTTAGAAGACAGAAGCAACACGGCGCAAGTCCCTCTTAGAATGGGTTGGGAAGGTGGAGGAGGCTCAGAGACAATCCATTGCACTCGCTTTGCTGCTCAATCTGAAGCATTTTTCCAGCCTTTGGGAGTCAATCCTAATTTGCAAATCGGATATAATCATGTGGGAGGGGAGGATGTAAATGTTGGAGGAGCTGCATTGAACGTTCATGGATTCTTTCCTGGGTGGATGCTTTAA 744 0.4651 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGSSMMKTLDKYQKYSYSALESSQPMSDTQSSYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTKELEQLENQVEASLKNVRSTKTQYMLDQLADLQNREKMLEETNRALRSKLEDRSNTAQVPLRMGWEGGGGSETIHCTRFAAQSEAFFQPLGVNPNLQIGYNHVGGEDVNVGGAALNVHGFFPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0788 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi13g0788 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 Coils Coil 117 144 - -
Mibi13g0788 247 Coils Coil 150 170 - -
Mibi13g0788 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi13g0788 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Mibi13g0788 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mibi13g0788 247 FunFam MADS-box transcription factor 1 13 89 - -
Mibi13g0788 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mibi13g0788 247 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Mibi13g0788 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi13g0788 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0788 Mibi-ChrMibi13 10036734 10041546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0788 1 247 MADS-box Gene Family AT5G15800 59.542 1.44e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi13g0788 K-box 1.3e-27 No_clan