Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0780 ATGATAGTGTCCACAAATATGGTGTTCTTTTTATCTGGTACTGGGAGTCCTTCATTTGCCACGCGCATTGACATCTGGCCATCATTGTTTTTGCTGGTTGAGTTGAGGATGCGGGAGTCAAGAAGTGAAAGAGCTCCTCTATTGGAAAACGGAGAAGGAAGGAAGAGAGGTGATGCCTCAGCTAATCAGATTACAGACCTTGAACATGGCGATGCTCTACCGGCTGCAAATGTGGGAGTTTGTCGAGTGCTTTCACTTGCAAAGCCTGATGCTGGCAAGTTGATACTTGCGACAGTGGCTCTTTTGGTTGCATCCACCTCAAGTATCTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTATCGGGAGATATTTCAACCCCTGAGGACAAAGCTAAAGCTCTGGATGCAGTAAAGAGCACCATCCTTTCTATTTTTCTGATTGTTATTGTGGGTTCAGTTTCCACTGCACTGCGAGCATGGCTTTTCTCTTCTGCCAGTGAAAGGGTTGTTGCACGTTTGAGAATAAGATTATTTAGTCACCTTGTGCAACAGGAGATAGCCTTCTATGATGTTACTAGAACTGGAGAACTTCTCAGCAGGCTATCTGAAGATACACAGATAATAAAGAATGCTGCAACTACCAATCTCTCTGAGGCCTTGAGGAACTTATCAACTGCCTTTATCGGTCTTTCCTTCATGTTTGCTACATCGTGGAAGTTAACTTTATTGGCTTTGGCTGTTGTACCTGCCATTTCTGTTGCTGTTCGTAAATTTGGCCGGTTCTTGCGTGAACTGTCTCACAAAACTCAAGCTGCTGCTGCGGTAGCTTCTTCAATCGCTGAGGAATCCTTTGGTGCTATAAGAACAGTGAGAGCTTTTGCCCAAGAAGAACATGAAATAGCTCAGTATTCTGAGAAAGTTGAAGAAACACTTAAGCTTGGACTTAAACAAGCTAAAGTGGTTGGACTCTTTTCTGGAGGCCTCAATGCGGCATCTACAATGTCAGTTATTGTAGTTGTTATATATGGAGCTAACTTGACAATCAAGGGTTCTATGTCTGCGGGTGATCTTACATCTTTTATTCTTTATAGTCTCACAGTGGGATCTGCTGTATCTGGTCTGTCATCATTGTATACAGTAGTAATGAAAGCTTCAGGAGCTAGCAGACGGGTATTTCAACTTCTGGATCGAGTCTCTTCCATGCCCAAGGCAGGAAACAAGTGTCCTTTGGGTGATCAAGATGGTGAAGTGGAGCTAGATGATGTTTGGTTTGCCTATCCATCACGTCCAAGTCATACAATACTCAAGGGAATCACATTGAAACTGCAGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTACTATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAGGGGAAGATCCTGGTGAATGGGGTTCCTCTGGTAGAAATATCACATGAGCATCTACACAAAAAGATTAGTATAGTGAGTCAGGAACCTACTCTTTTCAACTGTTCCATAGAGGAGAACATTGCTTATGGACTTGATGGCAAAGTTGATCCTGTTGATATAGAAAATGCTGCTAAAATGGCCAATGCACATGAGTTTGTGTCAAAGTTCCCAGAAAAGTACCAGACACATGTTGGAGAACGTGGGGTACGGCTTTCAGGAGGACAAAAGCAACGAATAGCTATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTTCTACTAGATGAAGCCACTAGTGCCTTGGATGCTGAAAGCGAATACCTAGTACAAGATGCCATGGATTCTCTAATGAAGGGAAGGACAGTTCTAGTTATTGCTCATAGGCTATCCACTGTTAAAAGTGCAAATGTTGTAGCAGTTATTTCTGATGGTCAAATAGTTGAAAGTGGCACCCATGATGAACTTCTCAGCAAGAACGGTGTTTATACGTCATTAGTCAGAAGACAACTTCAAACAGCAAAAGCTGAAATGTAG 1998 0.4264 MIVSTNMVFFLSGTGSPSFATRIDIWPSLFLLVELRMRESRSERAPLLENGEGRKRGDASANQITDLEHGDALPAANVGVCRVLSLAKPDAGKLILATVALLVASTSSILIPKFGGKIIDIVSGDISTPEDKAKALDAVKSTILSIFLIVIVGSVSTALRAWLFSSASERVVARLRIRLFSHLVQQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPAISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRAFAQEEHEIAQYSEKVEETLKLGLKQAKVVGLFSGGLNAASTMSVIVVVIYGANLTIKGSMSAGDLTSFILYSLTVGSAVSGLSSLYTVVMKASGASRRVFQLLDRVSSMPKAGNKCPLGDQDGEVELDDVWFAYPSRPSHTILKGITLKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHEHLHKKISIVSQEPTLFNCSIEENIAYGLDGKVDPVDIENAAKMANAHEFVSKFPEKYQTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSANVVAVISDGQIVESGTHDELLSKNGVYTSLVRRQLQTAKAEM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0780 665 FunFam ABC transporter B family member 25 146 416 - -
Mibi13g0780 665 Gene3D ABC transporter type 1, transmembrane domain 80 407 IPR036640 GO:0005524|GO:0016020
Mibi13g0780 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 419 656 IPR003439 GO:0005524
Mibi13g0780 665 ProSitePatterns ABC transporters family signature. 559 573 IPR017871 GO:0005524|GO:0016887
Mibi13g0780 665 Pfam ABC transporter transmembrane region 94 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi13g0780 665 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi13g0780 665 Gene3D - 413 662 IPR027417 -
Mibi13g0780 665 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 63 662 - -
Mibi13g0780 665 FunFam ABC transporter B family member 25 417 659 - -
Mibi13g0780 665 Pfam ABC transporter 437 587 IPR003439 GO:0005524
Mibi13g0780 665 CDD ABC_MTABC3_MDL1_MDL2 419 657 - -
Mibi13g0780 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 657 IPR027417 -
Mibi13g0780 665 SUPERFAMILY ABC transporter transmembrane region 82 398 IPR036640 GO:0005524|GO:0016020
Mibi13g0780 665 PIRSF ABC_prm/ATPase_B 24 665 - -
Mibi13g0780 665 Coils Coil 295 315 - -
Mibi13g0780 665 SMART AAA_5 446 640 IPR003593 -
Mibi13g0780 665 CDD ABC_6TM_AtABCB27_like 97 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0780 Mibi-ChrMibi13 9959376 9964819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0780 111 657 Calmodulin-binding Proteins AT2G36910 38.739 6.64e-105 344