Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0740 ATGGTACTCACAGAAGAACAGAGAAAACAAGTCGAAGCGAATCGCTTAGCCGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGTGGAGAAGAGAAAGACCCTTGGCAGCTTTTCAAGTGCCGTAAGATCTCTTCTGATTCTTCAATTCCCAAACCCCCCTCATCATCCACCCTTCCCCACTCCATTTCTGCTGCCCCTTTGCCCCATAAATTCTTGGTTAGGCTTGAAATTTGCTCTCCCAATTCCTTCTCTGCAACCCCTTTTCCCCTTCGTGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTAAGTGATCATTTGTCCAATGTTATGCCTTCACACTACACCCAGAATCATGATGGAAGAAACGCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAATGTTTGAAGGTTGTCACGGACATAGAGGTTGAAGAAATTCCGCGGGTAACTTTGAAAGCCGTTGAAGCATTTTCACATTTCTCTGGTACGGAGCGTTGGATACCCTGCAGGCCTGAGCATTTGTCTGATGACAAGGTTGATGACTTAATTGGGAAGCTACCAAGGGTTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTGAGATTTGGATTGAGAAGGGGTGGCCGGTGTCTTATTGCAGATGACATGGGCCTAGGGAAAACACTCCAGGCTATTACTATTGCAGGTTGTTTCTTGGATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTGGAGCGGTGGCTTCCCATTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTGACAAGATGCCCTAGAATTGTGGTTATTTCTTATACTATGCTCCATCGATTGAGGAAGAGCATGCTTGAGCGTGAATGGGCTCTCATGATTGTTGATGAATCTCATCATGTGAGATGTACGAGGAAGACCTCAGAACCAGGGGAGATAAAGACTGTTCTTGATGTAGCTTCAAAAGTCAAGCGTATAGTACTGCTATCTGGGACCCCTTCTTTGTCAAGGCCTGGACTGCTGGGCGAGAATAAATATGCATTTGCGAAAACTTATTGTGATTTTAAATATATCAAGGGAAACCATGGCAAAATTTATGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACCGTCATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAGTTACCCCCAAAACGGCGGCAAATTATAAGGTTGTTATTGAAGAGATCAGATGTAATTGCTGCAAAGATGGCGGTCGGAAAATTGAGTGGCATTACTTCCAAGAGTGACACTGAAGATGTGACTTTGGACAGTTTTGACGAACCTGATGGGATGTTGAGGAGATCAGACGCAGTTGCTGCAGAAACTGCAGTTGGGGTGTCAAATATTGATACTTCTGAAAGTGCCGACGAAGAGATAGCTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCATACCAGGAACTTGGAATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGTTGGGTCAGAAAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGGGTGCAGGAGTTTGTATGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAGCCCAGAGGTCAAAATTGCAATAATAGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAGCAGCCCAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGTCCAACCCTGATGCTTCAGGCTGAGGATAGAGCACATCGACGAGGACAAACAAATGCTGTCAATGTATATATCTTTTGTGCTAAGGATACTTTGGATGAGTCTCATTGGAAATATCTGAACAGAAGTTTGCACAGGGTTTCATCTACAACCGATGGTAAATATGATGCAATGAAAGAAATACAGGTTGAAGATGTTTCTGACTTGGACACATTCTTCAAAACTAATAGAAGATATGGAAGGCAACCTGCATCCGGTGAAACTTCAGAACAGGTGACCATGCTGCCAGATTTTGCCTCAGTTTCAAACTTGCAACCTTCCCAAGAAAATTTTGAGGAATCAGAAGCAAAATCAAGTGATCAAGCTGATCAGCAGATTTGCTTTGATGACAAGGTTTCCTTCCCAGAATCAGGTGAAGCTTCCATTTTGGATGTAAATTTGAATGTAGATGTTTTCGACGCCAAGGAAAAAAGCTCGGGTTTTGACATGAATGGGATTGGTCGAGTATACTGTCTGCTCTGTTGTCCAACTGCTCATGCTTTTTCTGAACGCATGGTTATTGAGCTAGTTTGACCAAGACCACTTTGTAAGAATTTTCGACCAGAGGAACTTGAGTTGCTTGATTCCCTTCCTGACGACGATAAAAAGAAAAAGGATAGTATTGGGGACAATCATGCTTTTACAGATGCTCTTTTGGGATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAGAAGTTACTAGGAAAGCCCTTACAGCTTCCCTTGGCTGTTGAATTGTGCTACCTGAACGAAACTAGCAGCCACGACAAGAAGGGATTATTAAACGGTGGAAGCAAACGGCGCATGACTCCTTTAATGGAGATAAGCCACCCTTTACCCTCAGATGCTGTTTGGAGAAAGGTCTGTCTGCGAAGTGGTAATGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCCGACAAATGAGCCACTCTGTAAGCTTTGTCAAAAGACATGCTTGAGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGCAAGAATTGAGCTTTTCGAAGTTGAACATGGTGTGTGCTCGAATTGCCATTTAGACTGTCACAAACTAGTTGAACATATAAAACCTTTGCCACTAGTAAGTCGAAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGAGAAAGAACATGCTCGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCATGCCGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTCGACTCGAGAATATGAGGACCCTATGTGTGGCCTGCCATTATGATGTTACCACAGCACAGTGTGCTGAACGACGCAAAGAGAGGGCCAAGGCCAAGAAACAACTAAAATTAGTAATGAGTGAGTTAAAAGCAGGTCAAACGAAGGTTGCCACAGGTTCTAATATTAAGGACCAGGGTCTTCTTGAGGTACAAGAGGATGTAAATGAGGATGAGCTCATTGTCAAGGTGCCTGGAAGTGCTTATTCAGTAGCTAATGGCTAA 3483 0.4332 MVLTEEQRKQVEANRLAAIERRKAVLEARGEEKDPWQLFKCRKISSDSSIPKPPSSSTLPHSISAAPLPHKFLVRLEICSPNSFSATPFPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVYNLRDYHAVLKCLKVVTDIEVEEIPRVTLKAVEAFSHFSGTERWIPCRPEHLSDDKVDDLIGKLPRVLLDALLPFQRDGLRFGLRRGGRCLIADDMGLGKTLQAITIAGCFLDEGSILVVCPAVLRFTWAEELERWLPICLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLEREWALMIVDESHHVRCTRKTSEPGEIKTVLDVASKVKRIVLLSGTPSLSRPGLLGENKYAFAKTYCDFKYIKGNHGKIYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVIAAKMAVGKLSGITSKSDTEDVTLDSFDEPDGMLRRSDAVAAETAVGVSNIDTSESADEEIALETLDESEGKLSYQELGIAKLSGFREWLSLHPVIVGSENASKMIIFAHHHKVLDGVQEFVCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSAAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKYLNRSLHRVSSTTDGKYDAMKEIQVEDVSDLDTFFKTNRRYGRQPASGETSEQVTMLPDFASVSNLQPSQENFEESEAKSSDQADQQICFDDKVSFPESGEASILDVNLNVDVFDAKEKSSGFDMNGIGRVYCLLCCPTAHAFSERMVIELVXPRPLCKNFRPEELELLDSLPDDDKKKKDSIGDNHAFTDALLGFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLNETSSHDKKGLLNGGSKRRMTPLMEISHPLPSDAVWRKVCLRSGNGKKEKEYTQGWTPTNEPLCKLCQKTCLSNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQARIELFEVEHGVCSNCHLDCHKLVEHIKPLPLVSRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERAKAKKQLKLVMSELKAGQTKVATGSNIKDQGLLEVQEDVNEDELIVKVPGSAYSVANG 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0740 1160 Pfam HNH endonuclease 1057 1088 IPR002711 GO:0003676|GO:0004519
Mibi13g0740 1160 Gene3D - 199 369 IPR038718 -
Mibi13g0740 1160 CDD SF2_C_SNF 520 649 - -
Mibi13g0740 1160 Pfam Helicase conserved C-terminal domain 538 638 IPR001650 -
Mibi13g0740 1160 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1108 - -
Mibi13g0740 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 691 IPR027417 -
Mibi13g0740 1160 CDD HNHc 1051 1091 IPR003615 -
Mibi13g0740 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 684 IPR001650 -
Mibi13g0740 1160 Gene3D - 977 1116 - -
Mibi13g0740 1160 Coils Coil 9 29 - -
Mibi13g0740 1160 SMART ultradead3 197 399 IPR014001 -
Mibi13g0740 1160 Gene3D - 467 716 IPR027417 -
Mibi13g0740 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 374 IPR014001 -
Mibi13g0740 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 413 IPR027417 -
Mibi13g0740 1160 Pfam SNF2-related domain 219 436 IPR000330 GO:0005524|GO:0140658
Mibi13g0740 1160 SMART helicmild6 555 638 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0740 Mibi-ChrMibi13 9490187 9502497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0740 543 695 RAD5 or RAD16-like Gene Family AT1G11100 33.987 7.72e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi13g0740 SNF2_N 7.5e-19 CL0023