Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0728 ATGGCGGGAGAATCATCGCCTTCTTCTTCTTCAGTTGTGCTTTCCATGGATGGTCTTGATGAAGTCGAAAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCAGAATGGCAACATGTCCTTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCAGCAACCGATGTGCTGCTTATCTTAGGATTAGCAAATTTTTGAAAGGCAGATCTCCATCAGCTTCAGAATATAAAGCATTGAGTGGCCTTGATCCTACTATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTACCCTGCAAAGTAATTCAGTAAGATCATACCTCTTAAAGGCTAATGCGCTATTTTTGTTAGAGAAATATGAGAAAGCCCGAGATGCTATTCTTTCAGGCCTTCAAGTTGATCCGCATAGCGATTCCTTGAGAGCTTCACTTAAAAGTTTGGATCTAGCATCTGCTAGTTTGATGGGAATGAGTAGACATGGACAGCCAGGGACGAGTGCTCACGGACAACCGGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCAGAAGAATATGCCAAAAGGAAGCAAGAGCATGACAGTTGGACCAACTTTGGCGTAGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAGCTCCCGCTGAATATTTTTGAACCTCGATATAGACTTATGGTCAGGAGAGTGATGGAAGGGAATCATAGGATGGGAATGGCTATGATTGATTCTGCCACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGACGTTTTTATATAGAGATTGAAAGTCACAGGAGATTTCGCATAATCCGATCTCAGGATCAAGATGGGTATCGTGTAGCAGAAGTTGAATGGATACAGGACCTCATGCCTCCAGAAGGTAGTAGAGAGAAACAGTCTTTACAAGAATTGGCGTATGATGCAGCAGAAACTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCAAAACAAGATCATAGAAGACTTGAGAGAATCCAGTCTGTTGAATTGATGATGCCTAGTCTAAGAGATCCTGAGCGCTTCAGTTTTTGGCTTGCTTCCTTATCAAAGCTGAGGCCTCTTGAAAGATTAGATCTTATGGGCTTAAGAAATACTGGAGAGAGGATTAGAAAAGGACTGAATTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAATAA 1503 0.4238 MAGESSPSSSSVVLSMDGLDEVENYVWAHEQEGLAWDTYHHIFELVQNGNMSFRENRLEEAINFYSRANSIKPGDPVILSNRCAAYLRISKFLKGRSPSASEYKALSGLDPTIHAELGLKDAEKLVTLQSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPHSDSLRASLKSLDLASASLMGMSRHGQPGTSAHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRTCSISVTLKSIIQKNFPEEYAKRKQEHDSWTNFGVDLIPLFVMDVVMPCQKLPLNIFEPRYRLMVRRVMEGNHRMGMAMIDSATGSLAEYACEVEITECEPLPDGRFYIEIESHRRFRIIRSQDQDGYRVAEVEWIQDLMPPEGSREKQSLQELAYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELMMPSLRDPERFSFWLASLSKLRPLERLDLMGLRNTGERIRKGLNYLRAEEQRCRIQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0728 500 SUPERFAMILY TPR-like 43 173 IPR011990 GO:0005515
Mibi13g0728 500 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Mibi13g0728 500 SMART lon_5 291 492 IPR003111 -
Mibi13g0728 500 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Mibi13g0728 500 Gene3D - 290 392 IPR046336 -
Mibi13g0728 500 ProSiteProfiles Lon N-terminal domain profile. 289 492 IPR003111 -
Mibi13g0728 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 287 IPR013083 -
Mibi13g0728 500 SUPERFAMILY RING/U-box 202 270 - -
Mibi13g0728 500 Gene3D Tetratricopeptide repeat domain 41 195 IPR011990 GO:0005515
Mibi13g0728 500 SUPERFAMILY PUA domain-like 292 490 IPR015947 -
Mibi13g0728 500 ProSiteProfiles Zinc finger RING-type profile. 208 246 IPR001841 -
Mibi13g0728 500 PANTHER RING FINGER PROTEIN 127 33 492 - -
Mibi13g0728 500 SMART tpr_5 133 166 IPR019734 GO:0005515
Mibi13g0728 500 SMART tpr_5 42 75 IPR019734 GO:0005515
Mibi13g0728 500 Pfam ATP-dependent protease La (LON) substrate-binding domain 292 490 IPR003111 -
Mibi13g0728 500 SMART ring_2 208 245 IPR001841 -
Mibi13g0728 500 Pfam Zinc finger, C3HC4 type (RING finger) 208 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0728 Mibi-ChrMibi13 9387299 9394580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0728 194 249 C3H Transcription Factor Family AT1G74990 33.898 4.02e-09 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi13g0728 13 9387299 9394580 Mibi13g0728 13 9387299 9394580 ECH