Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0624 ATGATTAATGCATCCAATCATTCCGGCCGCCGTATTCTATCATTCCCGGCGGTTCATCCCTGCGAAGGCATATCTCCGACGACCCTTCTCACTTCTCTGATCTCTCTCTCCCAATCCATATGCACTTTCCAATCAAAATTCTTCCCAACCCAACGTCGAAACTCGAGAGAAATCATTCGCCAACTGGGTATCATCCTTCTCTTCCTAGAAGAAATTCGAGACCGTGAAGTTCCCATAAGCGACTCTGTTTCACTCTGCTTCTCCGAACTTCACCTCTGTCTCCAAAAGATTCACTTTTTACTCTCAGATTGTACTCACGAAGGTGCTAAGCTATGGATGCTAATGAAATCTGAACACGTGGCAACTCAATTCCGAGTTCTGACTCGCTCGTTGGCCACAGCTCTTGATGTTTTACCTCTAAGCAGCATCGAGATTTGCGATGACGTGAAGGAAATGGTGGAGTTAGTAGCGAAGCAAGCTCAAAAAGTGAAGCTTGAATTAGACCCACAAGATGAACACACCAAAAGGCAAGTACTTTCAGCTTTGCATCAGTTCGAGAGAGGAATTGAGCCCAACCTCAGCATCATGAAGCGAACATTGAACTACTTGGGAATCAAGAACTGGAATGATTGCAACAAAGAGGTGAAATTCTTAGAAGATGAAGTCAACTTCAATTTCTCCGAAGGTGACGAAAGGGAAGTTCCCTTTCTTAGTAATTTAGTTGGTTATTCATGTTATTGCAGGGTACTTATATTTGAAACTCTTGATTTTCAACGGTCCAACGATATATCAGAAACAAAATGTAGCACTGAGATGATTAACTTCATAAACCCACATGATTTCCGATGTCCAATTTCGTTACAAATAATGACAGATCCTGTGACTATATCAACTGGTCAAACCTACGATCGTGTTTCCATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGTCCAAAAACAGGGGAGAAGCTAACAAATACAGAGCTTGTTCCAAACACAACACTCAGAAAGTTAATCCACCAGTTTTTCTCTGATAATGGAGTCTCCGCCGCAAATTCCGGTCACCAGAGTAGGGACATAACGAGAACGATCGTCGCCGGAAGTACGGCTACGGCACATGCCATGCAATTTCTCTCATGGTTTGTTGCGAGGAGGCTTGTGTTTGGAACAGAGGAGCAGAAAAACAAAGCAGCTTATGAAATTCGTGTGCTTGCAAGATCAAATATTTTTAATAGATCATGTTTGATCGAAGTTGGGACTGTTCCGTCATTGATCAATCTCTTGGAAAGTGAAGATAAATCAACGCAAGAAAATGCAATATCTGCTCTTTTGAAGCTGGCAAAGCATAGTAATGGACAGAGAGTTATAATGGAAAGTGAAGGATTAACACCAATCCTTAAAGTTCTCAAGAATGGGATTTCATTAGAAGCTCGTCAAACTTCAGCTGCTGTTATATTCTACCTTTCATCCACTAGAGAGAACAGAAAATTAATCGGAGAAAACCCAGAAGCGATTCCTTCATTAGTACAACTAATCAAGGAAGAAACAACAGCTTTTGGGAAGAAAAACGCCATAGTCGCCATTTTTGGGCTGCTTCTGCTTCCACAGAATCATCAGAAAGTTCTTGAAGCTGATATTGTACCTGCTCTTGTTAGGATCTTAGCCTCATCGGAAAAATCCGACCTCACGACGGATTGTTTGGCGGTGATGGCAGCGTTAGCGGAGAACGAGGAGGGAGCGAAAGCAGTGTCAAAAGCTTGTGGGTTGTCATTAATAGTTGGGATCTTACAGAAGGTGACTTGGAAAACAGGGAAGGAACATTGTGTGGCAATTTTGATGTCTTTGAGTGTTCATGTTGGAGAAGAAGTGGTGAGTATTCTGGCGAAAGATCCGGTGTTAATGCCATGGCTTTACTCTTTGATTACTGATGGAACTTCTCATGCGGCAAAGAAAGCTCGTTCTCTTATAAAGATTCTTCATGAGTTTAATGATACTAGAACTTCTCAGTGGCTTAGTTCCTCGGCTGTGCCTCAAAGATCCCTTCACATTTGGTGA 2058 0.4227 MINASNHSGRRILSFPAVHPCEGISPTTLLTSLISLSQSICTFQSKFFPTQRRNSREIIRQLGIILLFLEEIRDREVPISDSVSLCFSELHLCLQKIHFLLSDCTHEGAKLWMLMKSEHVATQFRVLTRSLATALDVLPLSSIEICDDVKEMVELVAKQAQKVKLELDPQDEHTKRQVLSALHQFERGIEPNLSIMKRTLNYLGIKNWNDCNKEVKFLEDEVNFNFSEGDEREVPFLSNLVGYSCYCRVLIFETLDFQRSNDISETKCSTEMINFINPHDFRCPISLQIMTDPVTISTGQTYDRVSIQKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLIHQFFSDNGVSAANSGHQSRDITRTIVAGSTATAHAMQFLSWFVARRLVFGTEEQKNKAAYEIRVLARSNIFNRSCLIEVGTVPSLINLLESEDKSTQENAISALLKLAKHSNGQRVIMESEGLTPILKVLKNGISLEARQTSAAVIFYLSSTRENRKLIGENPEAIPSLVQLIKEETTAFGKKNAIVAIFGLLLLPQNHQKVLEADIVPALVRILASSEKSDLTTDCLAVMAALAENEEGAKAVSKACGLSLIVGILQKVTWKTGKEHCVAILMSLSVHVGEEVVSILAKDPVLMPWLYSLITDGTSHAAKKARSLIKILHEFNDTRTSQWLSSSAVPQRSLHIW 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0624 685 SUPERFAMILY ARM repeat 391 661 IPR016024 -
Mibi13g0624 685 Gene3D - 29 143 IPR036537 GO:0007166
Mibi13g0624 685 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Mibi13g0624 685 Pfam Armadillo/beta-catenin-like repeat 412 448 IPR000225 GO:0005515
Mibi13g0624 685 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Mibi13g0624 685 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Mibi13g0624 685 SUPERFAMILY RING/U-box 278 349 - -
Mibi13g0624 685 FunFam RING-type E3 ubiquitin transferase 357 671 - -
Mibi13g0624 685 Gene3D - 390 502 IPR011989 -
Mibi13g0624 685 PANTHER U BOX DOMAIN-CONTAINING 67 660 - -
Mibi13g0624 685 FunFam RING-type E3 ubiquitin transferase 277 349 - -
Mibi13g0624 685 Gene3D - 503 677 IPR011989 -
Mibi13g0624 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Mibi13g0624 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Mibi13g0624 685 CDD RING-Ubox_PUB 281 323 IPR045210 -
Mibi13g0624 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 589 IPR000225 GO:0005515
Mibi13g0624 685 SMART arm_5 451 491 IPR000225 GO:0005515
Mibi13g0624 685 SMART arm_5 408 449 IPR000225 GO:0005515
Mibi13g0624 685 SMART arm_5 535 576 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0624 Mibi-ChrMibi13 8188530 8190587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0624 1 685 U-box Gene Family AT1G60190 40.517 7.20e-171 503